Hostname: page-component-78c5997874-g7gxr Total loading time: 0 Render date: 2024-11-02T23:57:23.516Z Has data issue: false hasContentIssue false

Description of Hemicycliophora cardamomi sp. n. (Nematoda: Hemicycliophoridae) associated with Amomum longiligulare T.L. Wu and a web-based key for the identification of Hemicycliophora spp.

Published online by Cambridge University Press:  14 January 2021

H.T. Nguyen
Affiliation:
Department of Nematology, Institute of Ecology and Biological Resources, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000Hanoi, Vietnam Department of Nematology, Graduate University of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000Hanoi, Vietnam Nematology Research Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000Ghent, Belgium
Q.P. Trinh*
Affiliation:
Department of Nematology, Institute of Ecology and Biological Resources, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000Hanoi, Vietnam Department of Nematology, Graduate University of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000Hanoi, Vietnam
M. Couvreur
Affiliation:
Nematology Research Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000Ghent, Belgium
T.D. Nguyen
Affiliation:
Department of Nematology, Institute of Ecology and Biological Resources, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000Hanoi, Vietnam Department of Nematology, Graduate University of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000Hanoi, Vietnam
W. Bert*
Affiliation:
Nematology Research Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000Ghent, Belgium
*
Author for correspondence: Q.P. Trinh, E-mail: [email protected]; W. Bert E-mail: [email protected]
Author for correspondence: Q.P. Trinh, E-mail: [email protected]; W. Bert E-mail: [email protected]

Abstract

During a survey of plant diseases in the Central Highlands of Vietnam, a new plant-parasitic nematode, Hemicycliophora cardamomi sp. n., was discovered in the growing areas of Amomum longiligulare, a valuable medicinal plant with high economical value. The new species is characterized by a cuticular sheath loosely fitting body; a labial region continuous to the body contour bearing 3 annuli; a lateral field frequently marked by a discontinuous single line with indistinct additional short lines in some parts along the body; a modified vulval lip with an anterior lip c. 4 annuli long; and a post-vulval body tapering to a pointed tail tip with an abrupt constriction at the last third of the post-vulval body. Morphology and molecular characterizations of D2-D3 expansion segment of 28S rRNA, ITS, and COI mtDNA gene regions clearly distinguish the new species from all other 133 known species. This study also provides a newly developed web-based key for the identification of Hemicycliophora spp. in order to accelerate the identification process, to minimize the increasing error load associated with larger datasets, and to avoid any dependence on a single starting entry. This key includes both an existing Bray–Curtis similarity measure and a newly developed similarity formula.

Type
Research Paper
Copyright
Copyright © The Author(s), 2021. Published by Cambridge University Press

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Altschul, SF, Madden, TL, Schäffer, AA, Zhang, J, Zhang, Z, Miller, W and Lipman, DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Research 25, 33893402.CrossRefGoogle ScholarPubMed
Andrássy, I (1970) Freilebende nematoden aus Vietnam. Opuscula Zoologica Budapestinensis 10, 531.Google Scholar
Barry, GH (2011) Phylogenetic trees made easy: A How-To manual. 4th edn. p. 282. Sunderland, MA, Sinauer Associates.Google Scholar
Bickford, D, Lohman, DJ, Sodhi, NS, Ng, PK, Meier, R, Winker, K, Ingram, KK and Das, I (2006) Cryptic species as a window on diversity and conservation. Trends in Ecology & Evolution 22, 148155.CrossRefGoogle ScholarPubMed
Blouin, MS (2002) Molecular prospecting for cryptic species of nematodes: Mitochondrial DNA versus internal transcribed spacer. International Journal for Parasitology 32, 527531.CrossRefGoogle ScholarPubMed
Bray, JR and Curtis, JT (1957) An ordination of the upland forest communities of southern Wisconsin. Ecological Monographs 27, 326349.CrossRefGoogle Scholar
Brzeski, MW (1974) Taxonomy of Hemicycliophorinae (Nematoda, tylenchida). Problemowe Postepow Nauk Rolniczych 154, 237330.Google Scholar
Cantalapiedra-Navarrete, C, Navas-Cortés, JA, Liébanas, G, Vovlas, N, Subbotin, SA, Palomares-Rius, JE and Castillo, P (2013) Comparative molecular and morphological characterisations in the nematode genus Rotylenchus: Rotylenchus paravitis n. sp., an example of cryptic speciation. Zoologischer Anzeiger-A Journal of Comparative Zoology 252, 246268.CrossRefGoogle Scholar
Chau, LT, Thang, TD, Huong, LT and Ogunwande, IA (2015) Constituents of essential oils from Amomum longiligulare from Vietnam. Chemistry of Natural Compounds 51, 11811183.CrossRefGoogle Scholar
Chitambar, JJ (1993) Host range of Hemicycliophora poranga and its pathogenicity on tomato. Fundamental and Applied Nematology 16, 557561.Google Scholar
Chitambar, JJ and Subbotin, SA (2014) Systematics of the sheath nematodes of the superfamily Hemicycliophoroidea. p. 732. Netherlands, Brill.CrossRefGoogle Scholar
Chitwood, BG and Birchfield, W (1957) A new genus Hemicriconemoides (Criconematidae: Tylenchina). Proceedings of the Helminthological Society of Washington 24, 8086.Google Scholar
Dang, NP, Nguyen, TT, Duong, TTC and Truong, TBP (2011) In vitro culture of Amomum longiligulare T.L.Wu. Vietnam Journal of Biotechnology 9, 689698.Google Scholar
Derycke, S, Vanaverbeke, J, Rigaux, A, Backeljau, T and Moens, T (2010) Exploring the use of cytochrome oxidase c subunit 1 (COI) for DNA barcoding of free-living marine nematodes. PLoS One 5, e13716.CrossRefGoogle ScholarPubMed
Fortuner, R and Wong, Y (1984) Review of the genus Helicotylenchus Steiner, 1945. 1: A computer program for identification of the species. Revue Nématol 7, 385392.Google Scholar
Franklin, MT and Stone, AR (1974) Hemicycliophora arenaria. CIH descriptions of plant-parasitic nematodes. London, UK, Commonwealth Agricultural Bureaux.Google Scholar
Goodey, T (1963) Soil and freshwater nematodes. 2nd edn. p. 544. New York, US, John Wiley & Sons.Google Scholar
Gutiérrez-Gutiérrez, C, Palomares-Rius, JE, Cantalapiedra-Navarrete, C, Landa, BB, Esmenjaud, D and Castillo, P (2010) Molecular analysis and comparative morphology to resolve a complex of cryptic Xiphinema species. Zoologica Scripta 39, 483498.CrossRefGoogle Scholar
Hagedorn, G, Rambold, G and Martellos, S (2010) Types of identification keys. pp. 5964 in Nimis, PL, Vignes Lebbe, R (Eds) Tools for identifying biodiversity: Progress and problems. Trieste, Paris, EUT Edizioni Università di Trieste.Google Scholar
Huelsenbeck, JP and Ronquist, F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754755.CrossRefGoogle ScholarPubMed
Lim, TK (2013) Edible medicinal And Non-medicinal plants. Volume 5, Fruits. London, UK, Springer, Dordrecht.Google Scholar
Loos, CA (1948) Notes on free-living and plant-parasitic nematodes of Ceylon 3. Ceylon Journal of Science. Section B. Zoology and Geology 23, 119124.Google Scholar
Malan, AP and Meyer, AJ (1993) The effect of hemicycliophora ripa on Swiss chard. Phytophylactica 25, 295295.Google Scholar
Maria, M, Cai, R, Qu, N, Castillo, P and Zheng, J (2018) Morphological and molecular characterization of Hemicycliophora subbotini n. sp. (Tylenchida: Hemicycliophoridae) from China. Zootaxa 4433, 161173.CrossRefGoogle ScholarPubMed
Nguyen, BK (1983) Plant parasitic Nematodes of south Vietnam. Journal of Nematology 15, 319323.Google Scholar
Nguyen, NC and Nguyen, VT (2000) Fauna of Vietnam, plant-parasitic nematodes (in Vietnamese). p. 401. Hanoi, Vietnam, Science and Technics Publishing House.Google Scholar
Nguyen, HT, Trinh, QP, Couvreur, M, Singh, PR, Decraemer, W and Bert, W (2019a) Description of Rotylenchus rhomboides n. sp. and a Belgian population of Rotylenchus buxophilus (Tylenchomorpha: Hoplolaimidae). Journal of Nematology 51, 120.Google Scholar
Nguyen, HT, Trinh, QP, Couvreur, M, Singh, PR, Decraemer, W and Bert, W (2019b) Molecular and morphological characterisation of a new root-lesion nematode, Pratylenchus horti n. sp. (Tylenchomorpha: Pratylenchidae) from Ghent university botanical garden. Nematology 21, 739752.CrossRefGoogle Scholar
Orton Williams, KJ (1978) Two new species of the genus Hemicycliophora de Man, 1921 (Nematoda: Tylenchida). Revue de Nématologie 1, 197205.Google Scholar
Palomares-Rius, JE, Cantalapiedra-Navarrete, C and Castillo, P (2014) Cryptic species in plant-parasitic nematodes. Nematology 16, 11051118.CrossRefGoogle Scholar
Subbotin, SA, Sturhan, D, Chizhov, VN, Vovlas, N and Baldwin, JG (2006) Phylogenetic analysis of Tylenchida Thorne, 1949 as inferred from D2 and D3 expansion fragments of the 28S rRNA gene sequences. Nematology 8, 455474.CrossRefGoogle Scholar
Thorne, G (1961) Principles of nematology. p. 53. New York, US, McGraw-Hill Book Company.Google Scholar
van den Berg, E (1988) A new Hemicycliophora species from coastal sand dunes in the western cape (Hemicycliophoridae: Nemata). Phytophylactica 20, 269276.Google Scholar
Van den Berg, E, Tiedt, LR, Liébanas, G, Chitambar, JJ, Stanley, JD, Inserra, RN, Castillo, P and Subbotin, SA (2018) Morphological and molecular characterisation of two new Hemicycliophora species (tylenchida: Hemicycliophoridae) with a revision of the taxonomic status of some known species and a phylogeny of the genus. Nematology 20, 319354.CrossRefGoogle Scholar
Vrain, TC, Wakarchuk, DA, Levesque, AC and Hamilton, RI (1992) Intraspecific rDNA restriction fragment length polymorphism in the Xiphinema americanum group. Fundamental and Applied Nematology 15, 563573.Google Scholar
Whitehead, AG and Hemming, JR (1965) A comparison of some quantitative methods of extracting small vermiform nematodes from soil. Annales of Applied Biology 55, 2538.CrossRefGoogle Scholar
Zullini, A and Manganelli, G (1989) A new computer program for nematode identification. Bioinformatics 5, 243244.CrossRefGoogle ScholarPubMed