Hostname: page-component-586b7cd67f-tf8b9 Total loading time: 0 Render date: 2024-11-27T16:44:13.290Z Has data issue: false hasContentIssue false

Genetic variation and combining abilities for vigour and yield in a recurrent selection programme for cacao

Published online by Cambridge University Press:  14 July 2016

F. K. PADI*
Affiliation:
Cocoa Research Institute of Ghana, Box 8, New Tafo, Akim, Ghana
A. OFORI
Affiliation:
Cocoa Research Institute of Ghana, Box 8, New Tafo, Akim, Ghana
A. ARTHUR
Affiliation:
Cocoa Research Institute of Ghana, Box 8, New Tafo, Akim, Ghana
*
*To whom all correspondence should be addressed. Email: [email protected]

Summary

The low genetic diversity of cacao germplasm collections in West Africa is often cited as a limitation to further yield improvement of the crop in its major production countries. Twelve clones obtained from first cycle selection for yield and clones available in international genebanks were tested for their combining ability for key agronomic traits by using these as males in crosses with five female clones available in the Seed Gardens in Ghana. Progenies obtained from a North Carolina II (NC II) mating design and standard varieties were planted at two sites that contrast in terms of soil fertility, rainfall total and distribution. Fifty-eight progenies obtained from the 5 × 12 incomplete NC II mating design and six other progenies, of which two were standard varieties, were evaluated at the more favourable location. At the less favourable location, 44 progenies of the NC II mating design and 20 other progenies, including the two standard varieties, were planted. A randomized complete block design with four replications was used at both locations. Progenies with PA 7 as female parent had better seedling survival at the location with poorer production conditions. Low levels of genetic diversity among female clones at 86 single nucleotide polymorphism loci was reflected in larger standard errors for the additive variance due to female parents relative to that due to male parents. Non-additive genetic effects were much larger than the corresponding additive variance components for all traits at each of the two locations. Average yields over the fourth and fifth years after planting ranged from 0·23 to 1·29 t/ha/year. The standard varieties were not among the best progenies for seedling vigour, yield or yield efficiency (yield per unit trunk cross-sectional area (TCSA) per year). Narrow-sense heritability estimates were higher for three estimates of tree vigour (estimated as increase in TCSA) than for yield traits. Heritability for yield efficiency was a moderate of h2 = 0·5 ± 0·23. The study indicates that further yield increments are attainable by selecting and crossing among the early cacao introductions into West Africa.

Type
Crops and Soils Research Papers
Copyright
Copyright © Cambridge University Press 2016 

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Adomako, B. & Adu-Ampomah, Y. (2000). Reflections on the yield of Upper Amazon cocoa hybrids in Ghana with reference to breeding for cocoa swollen shoot virus resistant varieties. Cocoa Growers’ Bulletin 52, 3345.Google Scholar
Adomako, B. & Adu-Ampomah, Y. (2005). Assessment of the yield of individual cacao trees in four field trials. In Proceedings of the International Workshop on Cocoa Breeding for Improved Production Systems (Eds Bekele, F., End, M. J. & Eskes, A. B.), pp. 4149. Accra, Ghana: INGENIC and COCOBOD.Google Scholar
Adomako, B., Allen, R. C. & Adu-Ampomah, Y. (1999 a). Combining abilities for yield and vegetative traits of Upper Amazon cocoa selections in Ghana. Plantations, Recherche, Développement 6, 183189.Google Scholar
Adomako, B., Allen, R. C. & Adu-Ampomah, Y. (1999 b). Evaluation of hybrids between Upper Amazon cocoa selections in Ghana. Plantations, Recherche, Développement 6, 455462.Google Scholar
Allegre, M., Argout, X., Boccara, M., Fouet, O., Roguet, Y., Bérard, A., Thévenin, J. M., Chauveau, A., Rivallan, R., Clement, D., Courtois, B., Gramacho, K., Boland-Augé, A., Tahi, M., Umaharan, P., Brunel, D. & Lanaud, C. (2012). Discovery and mapping of a new expressed sequence tag-single nucleotide polymorphism and simple sequence repeat panel for large-scale genetic studies and breeding of Theobroma cacao L. DNA Research 19, 2335. doi: 10.1093/dnares/dsr039.CrossRefGoogle ScholarPubMed
Argout, X., Fouet, O., Wincker, P., Gramacho, K., Legavre, T., Sabau, X., Risterucci, A. M., Da Silva, C., Cascardo, J., Allegre, M., Kuhn, D., Verica, J., Courtois, B., Loor, G., Babin, R., Sounigo, O., Ducamp, M., Guiltinan, M. J., Ruiz, M., Alemanno, L., Machado, R., Phillips, W., Schnell, R., Gilmour, M., Rosenquist, E., Butler, D., Maximova, S. & Lanaud, C. (2008). Towards the understanding of the cocoa transcriptome: production and analyses of an exhaustive datasets of ESTs of Theobroma cacao L. generated from various tissues and under various conditions. BMC Genomics 9, 512. doi: 10.1186/1471-2164-9-512.Google Scholar
Badu-Apraku, B., Oyekunle, M., Fakorede, M. A. B., Vroh, I., Akinwale, R. O. & Aderounmu, M. (2013). Combining ability, heterotic patterns and genetic diversity of extra-early yellow inbreds under contrasting environments. Euphytica 192, 413433.Google Scholar
Cervantes-Martinez, C., Brown, J. S., Schnell, R. J., Phillips-Mora, W., Takrama, J. F. & Motamayor, J. C. (2006). Combining ability for disease resistance, yield, and horticultural traits of cacao (Theobroma cacao L.) clones. Journal of the American Society for Horticultural Science 131, 231241.CrossRefGoogle Scholar
Crowdy, S. H. & Posnette, A. F. (1947). Virus diseases of cacao in West Africa. II. Cross-immunity experiments with viruses 1A, 1B and 1C. Annals of Applied Biology 34, 403411.Google Scholar
Dabholkar, A. R. (1999). Elements of Bio Metrical Genetics. New Dehli: Concept Publishing Company.Google Scholar
Daymond, A. J., Hadley, P., Machado, R. C. R. & Ng, E. (2002). Genetic variability in partitioning to the yield component of cacao (Theobroma cacao L). HortScience 37, 799801.Google Scholar
De Oliveira Leite, J. & Valle, R. R. (1990). Nutrient cycling in the cacao ecosystem: rain and throughfall as nutrient sources for the soil and the cacao tree. Agriculture, Ecosystems and Environment 32, 143154.Google Scholar
Dias, L. A. S. & Kageyama, P. Y. (1995). Combining-ability for cacao (Theobroma cacao L.) yield components under southern Bahia conditions. Theoretical Applied Genetics 90, 534541.Google Scholar
Engels, J. M. H. (1985). A systematic description of cacao clones. V. Quantitative genetic aspects of several fruit characters. Café Cacao Thé 29, 310.Google Scholar
Eskes, A. B. (2011). Collaborative and Participatory Approaches to Cocoa Variety Improvement. Final Report of the CFC/ICCO/Bioversity Project on Cocoa Productivity and Quality Improvement: a Participatory Approach (2004–2010). Amsterdam, London & Rome, The Netherlands: CFC, ICCO & Bioversity International.Google Scholar
Foster, G. S. & Bridgewater, F. E. (1986). Genetic analysis of fifth-year data from a seventeen parent partial diallel of loblolly pine. Silvae Genetica 35, 118122.Google Scholar
Glendinning, D. R. (1960). The relationship between growth and yield in cocoa varieties. Euphytica 9, 351355.Google Scholar
Glendinning, D. R. (1966 a). Further developments in the breeding programme at the Cocoa Research Institute, Tafo. Ghana Journal of Science 6, 5262.Google Scholar
Glendinning, D. R. (1966 b). Further observations on the relationship between growth and yield in cocoa varieties. Euphytica 15, 116127.Google Scholar
Glendinning, D. R. (1967). Technical aspects of the breeding programme at the Cocoa Research Institute, Tafo, Ghana. I. Breeding Methods. Euphytica 16, 7682.Google Scholar
Hallauer, R. A. & Miranda, J. B. (1988). Quantitative Genetics in Breeding, 3rd edn. Ames, IA: Iowa State University Press.Google Scholar
Hohls, T. (1996). Setting confidence limits to genetic parameters estimated by restricted maximum likelihood analysis of North Carolina design II experiments. Heredity 77, 476487.CrossRefGoogle Scholar
Husband, B. C. & Schemske, D. W. (1996). Evolution of the magnitude and timing of inbreeding depression in plants. Evolution 50, 5470.Google Scholar
King, J. G., Quinby, J. R., Stephens, J. C., Kramer, N. W. & Lahr, K. A. (1961). An Evaluation of Parents of Grain Sorghum Hybrids. Bulletin of Texas Agricultural Experimental Station M.P. 510. College Station, TX: Texas A&M University.Google Scholar
Knäbel, M., Friend, A. P., Palmer, J. W., Diack, R., Wiedow, C., Alspach, P., Deng, C., Gardiner, S. E., Tustin, D. S., Schaffer, R., Foster, T. & Chagné, D. (2015). Genetic control of pear rootstock-induced dwarfing and precocity is linked to a chromosomal region syntenic to the apple Dw1 loci. BMC Plant Biology 15, 230. DOI: 10.1186/s12870-015-0620-4 Google Scholar
Lachenaud, P. & Montagnon, C. (2002). Competition effects in cocoa (Theobroma cacao L.) hybrid trials. Euphytica 128, 97104.Google Scholar
Legg, J. T. & Lockwood, G. (1981). Resistance of cocoa swollen shoot virus in Ghana I. Field trials. Annals of Applied Biology 97, 7589.Google Scholar
Lockwood, G. (1976). A comparison of the growth and yield during a 20 year period of Amelonado and Upper Amazon hybrid cocoa in Ghana. Euphytica 25, 647658.Google Scholar
Lockwood, G. & Gyamfi, M. M. O. (1979). The CRIG Cocoa Germplasm Collection with Notes and Codes used in the Breeding Programme at Tafo and Elsewhere. Technical Bulletin 10. New-Tafo, Akim, Ghana: Cocoa Research Institute of Ghana.Google Scholar
Lockwood, G. & Pang, J. T. Y. (1994). Cocoa breeding at BAL Plantations. Genetic analysis and its implications for breeding strategy. In Proceedings of the International Workshop on Cocoa Breeding Strategies: Kuala Lumpur, Malaysia, 18–19th October 1994 (Eds End, M. J., Eskes, A. B., Lee, M. T. & Lockwood, G.), pp. 6680. Kota Kinabalu, Malaysia: Malaysian Cocoa Board.Google Scholar
Motamayor, J. C., Lachenaud, P., da Silva e Mota, J. W., Loor, R., Kuhn, D. N., Brown, J. S. & Schnell, R. J. (2008). Geographic and genetic population differentiation of the Amazonian chocolate tree (Theobroma cacao L). PLoS ONE 3, e3311. doi: 10.1371/journal.pone.0003311 Google Scholar
Nesme, T., Plenet, D., Hucbourg, B., Fandos, G. & Lauri, P.-E. (2005). A set of vegetative morphological variables to objectively estimate apple (Malus × domestica) tree orchard vigour. Scientia Horticulturae 106, 7690.CrossRefGoogle Scholar
Ofori, A., Padi, F. K., Acheampong, K. & Lowor, S. (2015). Genetic variation and relationship of traits related to drought tolerance in cocoa (Theobroma cacao L.) under shade and no-shade conditions in Ghana. Euphytica 201, 411421 Google Scholar
Padi, F. K., Opoku, S. Y., Adomako, B. & Adu-Ampomah, Y. (2012). Effectiveness of juvenile tree growth rate as an index for selecting high yielding cocoa families. Scientia Horticulturae 139, 1420.Google Scholar
Padi, F. K., Adu-Gyamfi, P., Akpertey, A., Arthur, A. & Ofori, A. (2013 a). Differential response of cocoa (Theobroma cacao) families to field establishment stress. Plant Breeding 132, 229236.Google Scholar
Padi, F. K., Takrama, J., Opoku, S. Y., Dadzie, A. M. & Assuah, M. K. (2013 b). Early-stage performance of cocoa clones relative to their progenitor ortets: implications for large-scale clone selection. Journal of Crop Improvement 27, 319341.Google Scholar
Padi, F. K., Ofori, A., Takrama, J., Djan, E., Opoku, S. Y., Dadzie, A. M., Bhattacharjee, R., Motamayor, J. C. & Zhang, D. (2015). The impact of SNP fingerprinting and parentage analysis on the effectiveness of variety recommendations in cacao. Tree Genetics and Genomes 11, 44. doi: 10.1007/s11295-015-0875-9 CrossRefGoogle Scholar
Pang, J. T. Y. (2006). Yield efficiency in progeny trials with cocoa. Experimental Agriculture 42, 289299.Google Scholar
Paulin, D., Mossu, G., Lachenaud, P. & Eskes, A. B. (1994). Genetic analysis of a factorial crossing scheme with cacao hybrids tested in four locations in the Ivory Coast. In Proceedings of the International Cocoa Conference. Challenges in the 90s (Eds Tay, E. B., Lee, M. T., Yap, T. N., Zulkarnain, B. I., Thong, F. T., Bong, S. L. & Tee, S. K.), pp. 7383. Kuala Lumpar, Malaysia: Malaysian Cocoa Board.Google Scholar
Peakall, R. & Smouse, P. E. (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6, 288295.Google Scholar
Peakall, R. & Smouse, P. E. (2012). GenAlEx 6·5: genetic analysis in Excel. Population genetic software for teaching and research – an update. Bioinformatics 28, 25372539.Google Scholar
Pires, J. L., Monteiro, W. R., Pinto, L. R. M., Figueira, A., Yamada, M. M. & Anhert, D. (1999). A proposal for cocoa breeding. In Proceedings of the 12th International Cocoa Research Conference, pp. 287292. Salvador, Lagos, Brazil, Nigeria: Cocoa Producers’ Alliance, COPAL.Google Scholar
Posnette, A. F. (1951). Progeny trials with cacao in the Gold Coast. Empire Journal of Experimental Agriculture 19, 242252.Google Scholar
Ritland, K. (1996). Estimators for pairwise relatedness and inbreeding coefficients. Genetics Research 67, 175186.CrossRefGoogle Scholar
Soria, J., Ocampo, F. & Paez, G. (1974). Parental influence of several cacao clones on the yield performance of their progenies. Turrialba (Costa Rica) 24, 5865.Google Scholar
Sprague, G. F. & Tatum, L. A. (1942). General vs. specific combining ability in single crosses of corn. Journal of the American Society of Agronomy 34, 923932.CrossRefGoogle Scholar
Stener, L. G. (2013). Clonal differences in susceptibility to the dieback of Fraxinus excelsior in southern Sweden. Scandinavian Journal of Forest Research 28, 205216.CrossRefGoogle Scholar
Tan, G. Y. (1990). Combining ability analyses of yield and its components in cacao. Journal of the American Society for Horticultural Science 115, 509512.CrossRefGoogle Scholar
Tan, G. Y. & Tan, W. K. (1990). Additive inheritance of resistance to pod rot caused by Phytophthora palmivora in cocoa. Theoretical and Applied Genetics 80, 258264.CrossRefGoogle ScholarPubMed
Thresh, J. M., Owusu, G. K., Boamah, A. & Lockwood, G. (1988). Ghanaian cocoa varieties and swollen shoot virus. Crop Protection 7, 219231.Google Scholar
Toxopeus, H. (1968). Establishment of cacao clones in Nigeria. Euphytica 17, 3845.Google Scholar
Visser, T. & de Vries, D. P. (1970). Precocity and productivity of propagated apple and pear seedlings as dependent on the juvenile period. Euphytica 19, 141144.CrossRefGoogle Scholar
Volz, R. K. & Knight, J. N. (1986). The use of growth regulators to increase precocity in apple trees. Journal of Horticultural Science 61, 181189.Google Scholar
Westwood, M. N. & Roberts, A. N. (1970). The relationship between trunk cross-sectional area and weight of apple trees. Journal of the American Society for Horticultural Science 95, 2830.Google Scholar
Supplementary material: File

Padi supplementary material

Table S1

Download Padi supplementary material(File)
File 32.9 KB