Hostname: page-component-78c5997874-ndw9j Total loading time: 0 Render date: 2024-11-03T04:59:19.073Z Has data issue: false hasContentIssue false
  • English
  • Français

Backcross breeding for improvement of heat tolerance at reproductive phase in Thai rice (Oryza sativa L.) varieties

Published online by Cambridge University Press:  13 November 2020

C. Malumpong Open the ORCID record for C. Malumpong [Opens in a new window] ,
R. Buadchee ,
B. Thammasamisorn ,
P. Moung-ngam ,
B. Wasuri ,
C. Saensuk ,
S. Arikit ,
A. Vannavichit  and
S. Cheabu Open the ORCID record for S. Cheabu [Opens in a new window]
C. Malumpong*
Affiliation:
Department of Agronomy, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Nakhon Pathom73140, Thailand Rice Science Center & Rice Gene Discovery Unit, Kasetsart University, Kamphaeng Sean Campus, Nakhon Pathom73140, Thailand
R. Buadchee
Affiliation:
Department of Agronomy, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Nakhon Pathom73140, Thailand
B. Thammasamisorn
Affiliation:
Thai Rice Science Institute, Department of Rice, Ministry of Agriculture and Cooperatives, Suphan Buri72000, Thailand
P. Moung-ngam
Affiliation:
Pathum Thani Rice Research Center, Department of Rice, Ministry of Agriculture and Cooperatives, Pathum Thani12110, Thailand
B. Wasuri
Affiliation:
Faculty of Science and Technology, Rajabhat Nakhon Pathom University, Nakhon Pathom73000, Thailand
C. Saensuk
Affiliation:
Rice Science Center & Rice Gene Discovery Unit, Kasetsart University, Kamphaeng Sean Campus, Nakhon Pathom73140, Thailand
S. Arikit
Affiliation:
Department of Agronomy, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Nakhon Pathom73140, Thailand Rice Science Center & Rice Gene Discovery Unit, Kasetsart University, Kamphaeng Sean Campus, Nakhon Pathom73140, Thailand
A. Vannavichit
Affiliation:
Department of Agronomy, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Nakhon Pathom73140, Thailand Rice Science Center & Rice Gene Discovery Unit, Kasetsart University, Kamphaeng Sean Campus, Nakhon Pathom73140, Thailand
S. Cheabu
Affiliation:
Faculty of Agriculture, Princess of Naradhiwas University, Naradhiwas96000, Thailand
*
Author for correspondence: C. Malumpong, E-mail: [email protected]
Get access Rights & Permissions [Opens in a new window]

Abstract

Heat stress during the reproductive and grain-filling stages leads to severe yield losses in rice, especially in irrigated areas during the dry season in Thailand. Thus, breeding for heat-tolerant rice is one of the strategies for developing rice crops adapted to the effects of high temperature in major growing regions. M9962, a fast neutron-induced mutant, was identified as a heat-tolerant line that was then used as a donor parent and crossed with the Phisanulok 2 (PSL2) cultivar (the recurrent parent) in a backcross breeding programme. Heat tolerance scoring under controlled greenhouse and field conditions was based on the percentage of spikelet fertility. Yield trials for the BC2F7 and BC3F6 lines were subsequently conducted under field conditions at three locations and under controlled greenhouse conditions during the dry season of 2019 (DS2019). In the early generation, 210 plants of the BC1F1 population and 440 plants of BC2F1 population were evaluated for their heat tolerance, and the spikelet fertility distribution within the BC1F1, BC2F1 and BC3F1 populations showed a skewed-right pattern. In addition, most rice plants in every generation were heat sensitive. Finally, compared with PSL2, the four-candidate heat-tolerant lines exhibited a high percentage of spikelet fertility and high yield. In addition, the one candidate line, BC2F7-6-5-4-1-1-21 was most similar to PSL2 in terms of genetic background, plant type and grain quality. Thus, backcross breeding programmes via the spikelet fertility can be used as an indirect trait to select for heat tolerance.

Keywords

Grain yieldheat stressphenotypic selectionspikelet fertility
Type
Crops and Soils Research Paper
Information
The Journal of Agricultural Science , Volume 158 , Issue 6 , August 2020 , pp. 496 - 510
Check for updates
Copyright
Copyright © The Author(s), 2020. Published by Cambridge University Press

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Acquaah, G (2012) Principles of Plant Genetics and Breeding. USA: Wiley-Backwell.CrossRefGoogle Scholar
Allard, RW (1960) Principles of Plant Breeding. New York, USA: John Wiley & Sons Inc.Google Scholar
Bac-Molenaar, JA, Fradin, EF, Becker, FFM, Rienstra, JA, van der Schoot, J, Vreugdenhil, D and Keurentjes, JJB (2015) Genome-wide association mapping of fertility reduction upon heat stress reveals developmental stage-specific QTLs in Arabidopsis thaliana. Plant Cell 27, 1857–1874.CrossRefGoogle ScholarPubMed
Bahuguna, RN, Jha, J, Pal, M, Shah, D, Lawas, LM, Khetarpal, S and Jagadish, KSV (2015) Physiological and biochemical characterization of NERICA-L-44: a novel source of heat tolerance at the vegetative and reproductive stages in rice. Physiologia Plantarum 154, 543–559.10.1111/ppl.12299CrossRefGoogle ScholarPubMed
Baker, JT, Allen, LH and Boote, KJ (1992) Temperature effects on rice at elevated CO2 concentration. Journal of Experimental Botany 43, 959–964.CrossRefGoogle Scholar
Cao, L, Zhao, J, Zhan, X, Li, D, He, L and Cheng, S (2003) Mapping QTLs for heat tolerance and correlation between heat tolerance and photosynthetic rate in rice. Chinese Journal of Rice Science 17, 223–227.Google Scholar
Cheabu, S, Moung-Nham, P, Arikit, S, Vanavichit, A and Malumpong, C (2018) Effects of heat stress at vegetative and reproductive stages on spikelet fertility. Rice Science 25, 218–226.CrossRefGoogle Scholar
Cheabu, S, Panichawong, N, Rattanametta, P, Wasuri, B, Kasemsap, P, Arikit, S, Vanavichit, A and Malumpong, C (2019) Screening for spikelet fertility and validation of heat tolerance in a large rice (Oryza sativa L.) mutant population. Rice Science 26, 229–238.CrossRefGoogle Scholar
Chen, Q, Yu, S, Li, C and Mou, T (2008) Identification of QTLs for heat tolerance at flowering stage in rice. Scientia Agricultura Sinica 41, 315–321.Google Scholar
Counce, PA, Keisling, TC and Mitchell, AJ (2000) A uniform, objective, and adaptive system for expressing rice development. Crop Science 40, 436–443.CrossRefGoogle Scholar
Department of agricultural extension (2016) The situation of planting area and grain yield of Phisanulok2 cultivar in 2016. http://www.agriinfo.doae.go.th/year59/plant/rortor/rice/rice2/rice21/rice2132.pdf (in Thai), 1 December 2019.Google Scholar
Fahad, S, Bajwa, AA, Nazir, U, Anjum, SA, Farooq, A, Zohaib, A, Sadia, S, Nasim, W, Adkins, S, Saud, S, Ihsan M, Z, Alharby, H, Wu, C, Wang, D and Huang, J (2017) Crop production under drought and heat stress: plant responses and management options. Frontiers in Plant Science 8, 1147. https://doi.org/10.3389/fpls.2017.01147.CrossRefGoogle ScholarPubMed
Forster, BP, Till, BJ, Ghanim, AMA, Huynh, HO, Burstmayr, H and Caligari, PD (2014) Accelerated plant breeding. CAB Review 43, 1–16.Google Scholar
Gauch, HG (1988) Model selection and validation for yield trials with interaction. Biometrics 44, 705–715.CrossRefGoogle Scholar
Giorno, F, Wolters-Arts, M, Mariani, C and Rieu, I (2013) Ensuring reproduction at high temperatures: the heat stress response during anther and pollen development. Plants 2, 489–506.CrossRefGoogle ScholarPubMed
Govindaraj, M, Pattanashetti, SK, Patne, N and Kanatti, AA (2018) Breeding cultivars for heat stress tolerance in staple food crops. In Ciftci, YO (ed). Next Generation Breeding. Turkey: Gebze Technical University.Google Scholar
Huang L, Y, Sun, Y, Peng, SB and Wang, F (2016) Genotypic differences of japonica rice responding to high temperature in China. Agronomy Journal 108, 626–636.CrossRefGoogle Scholar
IPCC (2012) Managing the risks of extreme events and disasters to advance climate change adaptation. https://www.ipcc.ch/pdf/special-reports/srex/SREX_Full_Report.pdf.Google Scholar
IRRI (2013) Standard Evaluation System for Rice (ses). Manila, Philippines: International Rice Research Institute 5, 35–36.Google Scholar
Jagadish, SVK, Craufurd, PQ and Wheler, TR (2007) High temperature stress and spikelet fertility in rice (Oryza sativa L.). Journal of Experimental Botany 58, 1627–1635.CrossRefGoogle Scholar
Jagadish, SVK, Craufurd, P and Wheeler, T (2008) Phenotyping parents of mapping population of rice for heat tolerance during anthesis. Crop Science 48, 1140–1146.CrossRefGoogle Scholar
Jagadish, SVK, Cairns, J, Lafitte, R, Wheeler, TR, Price, AH and Craufurd, PQ (2010) Genetic analysis of heat tolerance at anthesis in rice. Crop Science 50, 1633–1641.CrossRefGoogle Scholar
Jagadish, SVK, Craufurd, P, Shi, W and Oane, R (2013) A phenotypic marker for quantifying heat stress impact during microsporogenesis in rice (Oryza sativa L.). Functional Plant Biology 41, 48–55.CrossRefGoogle Scholar
Jiang-lin, L, Hong-yu, Z, Xue-lian, S, Ping-an, Z and Ying-jin, H (2011) Identification for heat tolerance in backcross recombinant lines and screening of backcross introgression lines with heat tolerance at milky stage in rice. Rice Science 18, 279–286.Google Scholar
Juliano, BO (1971) A simplified assay for milled rice amylose. Cereal Science Today 16, 334–340.Google Scholar
Juliano, BO (1985) Criteria and test for rice grain quality. In Rice Chemistry and Technology. Saint Paul: American Association of Cereal Chemists (AACC), pp. 443–513.Google Scholar
Khan, S, Anwar, S, Ashraf, MY, Khaliq, B, Sun, M, Hussain, S, Gao, Z, Noor, H and Alam, S (2019) Mechanisms and adaptation strategies to improve heat tolerance in rice. A Review. Plant 8, 508. doi:10.3390/plants8110508.Google ScholarPubMed
Kilasi, NL, Singh, J, Vallejos, CE, Ye, C, Jagadish, SVK, Kusolwa, P and Rathinasabapathi, B (2018) Heat stress tolerance in rice (Oryza sativa L.): identification of quantitative trait loci and candidate genes for seedling growth under heat stress. Frontiers in Plant Science 9, 1578.10.3389/fpls.2018.01578CrossRefGoogle ScholarPubMed
Lang, NT, Ha, PTT, Tru, PC, Toam, TB, Buu, BC and Cho, YC (2015) Breeding for heat tolerance rice based on marker-assisted backcrossing in Vietnam. Plant Breeding and Biotechnology 3, 274–281.10.9787/PBB.2015.3.3.274CrossRefGoogle Scholar
Langmead, B and Salzberg, S (2012) Fast gapped-read alignment with Bowtie 2. Nature Methods 9, 357–359.CrossRefGoogle ScholarPubMed
Little, R R and Hilder, G B (1958) Differential effect of dilute alkali on 25 varieties of milled rice. Cereal Chemistry 35, 111–126Google Scholar
Malumpong, C, Cheabu, S, Mongkolsiriwatana, C, Detpittayanan, W and Vanavichit, A (2019) Spikelet fertility and heat shock transcription factor (Hsf) gene responses to heat stress in tolerant and susceptible rice (Oryza sativa L.) genotypes. The Journal of Agricultural Science, Cambridge 154, 283–299.10.1017/S002185961900056XCrossRefGoogle Scholar
Manigbas, N, Lambio, LA, Madrid, LB and Cardenas, CC (2014) Germplasm innovation of heat tolerance rice for irrigated conditions in the Philippines. Rice Science 21, 162–169.10.1016/S1672-6308(13)60180-8CrossRefGoogle Scholar
Matsui, T, Namuco, OS, Ziska, LH and Horie, T (1997) Effects of high temperature and CO2 concentration on spikelet sterility in indica Rice. Field Crops Research 51, 213–219.CrossRefGoogle Scholar
Matsushima, S, Ikewada, H, Maeda, A, Honda, S and Niki, H (1982) Studies on rice cultivation in the tropics, yielding and ripening responses of the rice plant to the extremely hot and dry climate in Sudan. Journal of Science with Technological Applications 26, 19–25.Google Scholar
McKenna, A, Hanna, M, Banks, E, Sivachenko, A, Cibulskis, K, Kernytsky, A, Garimella, K, Altshuler, D, Gabriel, S, Daly, M and DePristo, MA (2010) The genome analysis toolkit: a MapReduce framework for analysing next-generation DNA sequencing data. Genome Research 20, 1297–1303.CrossRefGoogle Scholar
Meng, LJ, Ma, XF, Tang, ZQ, Sheng, F, Cui, YR, Cai, L, Chen, K, Xu, JL and Li, ZK (2012) Screening and evaluation of heat tolerance of introgression lines with japonica Chaoyou 1 background. Acta Agronomica Sinica 38, 1949–1959.10.3724/SP.J.1006.2012.01949CrossRefGoogle Scholar
Meteorological Development Bureau (2016) Annual weather summary over Thailand 2015. https://www.tmd.go.th/programmes/uploads/yearlySummary/annual2015_e.pdf.Google Scholar
Mondal, S, Singh, RP, Mason, ER, Huerta-Espino, J, Autrique, E and Joshi, AK (2016) Grain yield, adaptation and progress in breeding for early-maturing and heat-tolerant wheat lines in South Asia. Field Crops Research 192, 78–85.CrossRefGoogle ScholarPubMed
Moung-ngam, P (2016) Evaluation of Heat Tolerance in Rice Germplasm (Master thesis). Kasetsart University, Bangkok, Thailand: .Google Scholar
Nubankoh, P, Wanchana, S, Saensuk, C, Ruanjaichon, V, Cheabu, S, Vanavichit, A, Toojinda, T, Malumpong, C and Arikit, S (2019) QTL-Seq reveals genomic regions associated with spikelet fertility in response to a high temperature in rice (Oryza sativa L.). Plant Cell Reports 39, 149–162. https://doi.org/10.1007/s00299-019-02477-z.CrossRefGoogle Scholar
Osada, A, Sasiprapa, V, Rahong, M, Dhammanuvong, S and Chakrabandho, H (1973) Abnormal occurrence of empty grains of indica rice plants in the dry hot season in Thailand. Proceedings of the Crop Science Society of Japan 42, 103–109.CrossRefGoogle Scholar
Pansrithong, M, Romkaew, J, Malumpong, C, Thongket, P and Thongjoo, C (2019) Effect of high temperature at reproductive stage on seed set and seed quality of rice. Khon Kaen Agriculture Journal 47, 445–458, (in Thai).Google Scholar
Poli, Y, Basava, RK, Panigrahy, M, Vinukonda, VP, Dokula, NR and Voleti, SR (2013) Characterization of a Nagina22 rice mutant for heat tolerance and mapping of yield traits. Rice 6, 36.CrossRefGoogle ScholarPubMed
Prasad, PVV, Bootee, KJ, Sheehy, JE and Thomas, JMG (2006) Species, ecotype and cultivar differences in spikelet fertility and harvest index of rice in response to high temperature stress. Field Crop Research 95, 398–411.CrossRefGoogle Scholar
Prasanth, VV, Chakravarthi, DVN, Vishnu, KT, Venkateswara, RY, Panigrahy, M and Mangrauthia, SK (2012) Evaluation of rice germplasm and introgression lines for heat tolerance. Annals of Biological Research 3, 5060–5068.Google Scholar
Prasanth, VV, Basava, KR, Babu, MS, Venkata Tripura, VGN, Rama Devi, SJS, Mangrauthia, SK, Voleti, SR and Sarla, N (2016) Field level evaluation of rice introgression lines for heat tolerance and validation of markers linked to spikelet fertility. Physiology and Molecular Biology of Plants 22, 179–192.CrossRefGoogle ScholarPubMed
R Core Team, (2014) R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing.Google Scholar
Redona, ED, Manigbas, NL, Laza, MA, Sierra, SN, Bartolome, VI, Nora, LA, Barroga, WV and Noriel, AJM (2009) Identifying heat tolerant rice genotypes under different environments. SABRAO Journal of Breeding and Genetics, 41(suppl), 109–112.Google Scholar
Sanchez-Reinoso, AD, Garces-Varon, G and Restrepo-Diaz, H (2014) Biochemical and physiological characterization of three rice cultivars under different daytime temperature conditions. Chilean Journal of Agricultural Research 74, 373–379.10.4067/S0718-58392014000400001CrossRefGoogle Scholar
Sarsu, F, Ghanim, AMA, Das, P, Bahuguna, RN, Kusolwa, PM, Ashraf, M, Singla-Pareek, SL, Pareek, A, Forster, BP and Ingelbrecht, I (2018) Pre-field Screening Protocols for Heat-Tolerant Mutants in Rice. Switzerland: Springer Open.CrossRefGoogle Scholar
Satake, T and Yoshida, S (1978) High temperature induced sterility in indica rice at flowering. Japanese Journal of Crop Science 47, 6–17.CrossRefGoogle Scholar
Shah, F, Huang, J, Kul, K, Nie, L, Shah, T and Chen, C (2011) Impact of high-temperature stress on rice plant and its traits related to tolerance. The Journal of Agricultural Science, Cambridge 149, 545–556.CrossRefGoogle Scholar
Shanmugavadivel, PS, Amitha Mithra, SV, Chandra, P, Ramkumar, MK, Ratan, T, Trilochan, M and Singh, NK (2017) High resolution mapping of QTLs for heat tolerance in rice using a 5 K SNP array. Rice 10, DOI 10.1186/s12284-017-0167-0.Google Scholar
Tayade, R, Nguyen, TD, Oh, SA, Hwang, YS, Yoon, IS, Deshmuk, R, Jung, KH and Park, SK (2018) Effective strategies for enhancing tolerance to high-temperature stress in rice during the reproductive and ripening stages. Plant Breeding and Biotechnology 6, 1–8.CrossRefGoogle Scholar
Tenorio, FA, Ye, C, Redona, E, Sierra, S, Laza, M and Argayoso, MA (2013) Screening rice genetic resources for heat tolerance. SABRAO Journal of Breeding and Genetics 45, 371–381.Google Scholar
Tian, X, Luo, H, Zhou, H and Wu, C (2009) Research on heat stress of rice in China: progress and prospect. Chinese Agricultural Science Bulletin 25, 166–168.Google Scholar
Tonini, A and Cabrera, E (2011) Globalizing rice research for a changing world (Technical Bulletin No. 15). International Rice Research Institute, Los Banos.Google Scholar
Wang, Y, Wang, L, Zhou, J, Hu, S, Chen, H, Xiang, J, Zhang, Y, Zeng, Y, Shi, Q, Zhu, D and Zhang, Y (2019) Research progress on heat stress of rice at flowering stage. Rice Science 26, 1–10.CrossRefGoogle Scholar
Wassmann, R, Jagadish, SVK, Sumfleth, K, Pathak, H, Howell, G, Ismail, A, Serraj, R, Redoña, E, Singh, RK and Heuer, S (2009) Regional vulnerability of climate change impacts on Asian rice production and scope for adaptation. Advances in Agronomy 102, 93–105.Google Scholar
Xia, MY and Qi, HX (2004) Effects of high temperature on the seed setting percent of hybrid rice bred with four male sterile lines. Hubei Agricultural Sciences 2, 21–22.Google Scholar
Xiao, Y, Pan, Y, Luo, L, Zhang, G, Deng, H, Dai, L, Liu, X, Tang, W, Chen, L and Wang, GL (2011) Quantitative trait loci associated with seed set under high temperature stress at the flowering stage in rice (Oryza sativa L.). Euphytica 178, 331–338.CrossRefGoogle Scholar
Ye, C, Tenerio, FA, Argayoso, MA, Laza, MA, Koh, HJ, Redeno, ED, Jagadish, SVK and Gregorio, GB (2015) Identifying and confirming quantitative trait loci associated with heat tolerance at flowering stage in different rice populations. BMC Genetics 16, 41.CrossRefGoogle ScholarPubMed
Yoshida, S (1981) Fundamentals of rice crops science. International Rice Research Institute, Los Banos. The Philippines.Google Scholar
Zhang, HY, Huang, YJ, Wang, DH, Qi, YX, Zhong, PG, Li, GH, Liu, K and Kuang, HY (2004) A study on developing near isogenic lines of heat tolerance at grain filling stage in rice. Acta Agriculturae Universitatis Jiangxiensis 26, 847–853.Google Scholar
Zhang, T, Yang, L, Jiang, K, Huang, M, Sun, Q, Chen, W and Zheng, J (2008) QTL Mapping for heat tolerance of the tassel period of rice. Molecular Plant Breeding 6, 867–873.Google Scholar
Zhang, G, Chen, L, Xiao, G, Xiao, Y, Chen, X and Zhang, S (2009) Bulked segregant analysis to detect QTL related to heat tolerance in rice using SSR markers. Agricultural Sciences in China 8, 482–487.CrossRefGoogle Scholar
Supplementary material: File

Malumpong et al. supplementary material

Table S1

Download Malumpong et al. supplementary material(File)
File 14.2 KB