Hostname: page-component-669899f699-ggqkh Total loading time: 0 Render date: 2025-05-02T18:32:15.242Z Has data issue: false hasContentIssue false
  • English
  • Français

Whole-genome sequencing surveillance: Growing evidence for a future potential practice standard of infection prevention

Published online by Cambridge University Press:  11 December 2023

Alexander J. Sundermann Open the ORCID record for Alexander J. Sundermann [Opens in a new window]  and
Waleed Javaid Open the ORCID record for Waleed Javaid [Opens in a new window]
Alexander J. Sundermann*
Affiliation:
Division of Infectious Diseases, Department of Medicine, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania
Waleed Javaid
Affiliation:
Division of Infectious Diseases, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York
*
Corresponding author: Alexander J. Sundermann; Email: [email protected]
Get access Rights & Permissions [Opens in a new window]

Abstract

An abstract is not available for this content so a preview has been provided. Please use the Get access link above for information on how to access this content.
Image of the first page of this content. For PDF version, please use the ‘Save PDF’ preceeding this image.'
Type
Commentary
Information
Infection Control & Hospital Epidemiology , Volume 45 , Issue 2 , February 2024 , pp. 135 - 136
Check for updates
Copyright
© The Author(s), 2023. Published by Cambridge University Press on behalf of The Society for Healthcare Epidemiology of America

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

Article purchase

Temporarily unavailable

References

Sundermann, AJ, Chen, J, Miller, JK, et al. Whole-genome sequencing surveillance and machine learning for healthcare outbreak detection and investigation: a systematic review and summary. Antimicrob Steward Healthc Epidemiol 2022;2:e91.10.1017/ash.2021.241CrossRefGoogle ScholarPubMed
Price, V, Ngwira, LG, Lewis, JM, et al. A systematic review of economic evaluations of whole-genome sequencing for the surveillance of bacterial pathogens. Microb Genom 2023;9:mgen000947.Google ScholarPubMed
Lee, AS, Dolan, L, Jenkins, F, Crawford, B, van Hal, SJ. Active surveillance of carbapenemase-producing Enterobacterales using genomic sequencing for hospital-based infection control interventions. Infect Control Hosp Epidemiol 2023. doi: 10.1017/ice.2023.205 Google ScholarPubMed
Suleyman, G, Alangaden, G, Bardossy, AC. The role of environmental contamination in the transmission of nosocomial pathogens and healthcare-associated infections. Curr Infect Dis Rep 2018;20:12.10.1007/s11908-018-0620-2CrossRefGoogle ScholarPubMed
Environmental sampling: guidelines for environmental infection control in healthcare facilities. Centers for Disease Control and Prevention website. https://www.cdc.gov/infectioncontrol/guidelines/environmental/background/sampling.html. Published April 9, 2019. Accessed September 18, 2023.Google Scholar
Cassone, M, Wang, J, Lansing, BJ, et al. Diversity and persistence of MRSA and VRE in skilled nursing facilities: environmental screening, whole-genome sequencing and development of a dispersion index. J Hosp Infect 2023;138:8–18.10.1016/j.jhin.2023.04.015CrossRefGoogle ScholarPubMed
Doughty, EL, Liu, H, Moran, RA, et al. Endemicity and diversification of carbapenem-resistant Acinetobacter baumannii in an intensive care unit. Lancet Reg Health West Pac 2023;37:100780.Google Scholar
Fox, JM, Saunders, NJ, Jerwood, SH. Economic and health impact modelling of a whole-genome sequencing-led intervention strategy for bacterial healthcare-associated infections for England and for the USA. Microb Genom 2023;9:mgen001087.Google ScholarPubMed
Sundermann, AJ, Chen, J, Kumar, P, et al. Whole-genome sequencing surveillance and machine learning of the electronic health record for enhanced healthcare outbreak detection. Clin Infect Dis 2022;75:476–482.10.1093/cid/ciab946CrossRefGoogle ScholarPubMed
CORHA principles and practices for healthcare outbreak response. Council for Outbreak Response: Healthcare-Associated Infections and Antimicrobial-Resistant Pathogens (CORHA) website. https://www.corha.org/resources/corha-principles-and-practices-for-outbreak-response/. Accessed September 18, 2023.Google Scholar