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An Unconditionally Energy Stable Immersed Boundary Method with Application to Vesicle Dynamics

Published online by Cambridge University Press:  28 May 2015

Wei-Fan Hu*
Affiliation:
Center of Mathematical Modeling and Scientific Computing & Department of Applied Mathematics, National Chiao Tung University, 1001, Ta Hsueh Road, Hsinchu 300, Taiwan
Ming-Chih Lai*
Affiliation:
Center of Mathematical Modeling and Scientific Computing & Department of Applied Mathematics, National Chiao Tung University, 1001, Ta Hsueh Road, Hsinchu 300, Taiwan
*
Corresponding author. Email Address: [email protected]
Corresponding author. Email Address: [email protected]
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Abstract

We develop an unconditionally energy stable immersed boundary method, and apply it to simulate 2D vesicle dynamics. We adopt a semi-implicit boundary forcing approach, where the stretching factor used in the forcing term can be computed from the derived evolutional equation. By using the projection method to solve the fluid equations, the pressure is decoupled and we have a symmetric positive definite system that can be solved efficiently. The method can be shown to be unconditionally stable, in the sense that the total energy is decreasing. A resulting modification benefits from this improved numerical stability, as the time step size can be significantly increased (the severe time step restriction in an explicit boundary forcing scheme is avoided). As an application, we use our scheme to simulate vesicle dynamics in Navier-Stokes flow.

Type
Research Article
Copyright
Copyright © Global-Science Press 2013

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References

[1]Adams, J., Swarztrauber, P. and Sweet, R., Fishpack – A Package of Fortran Subprograms for the Solution of Separable Elliptic Partial Differential Equations, (1980).Google Scholar
[2]Beale, J. T., Partially implicit motion of a sharp interface in Navier-Stokes flow, J. Comput. Phys. 231, 61596172 (2012).Google Scholar
[3]Ceniceros, H. D., Fisher, J. E. and Roma, A. M., Efficient solutions to robust, semi-implicit discretizations of the immersed boundary method, J. Comput. Phys. 228, 71377158 (2009).CrossRefGoogle Scholar
[4]Ceniceros, H. D. and Fisher, J. E., A fast, robust and non-stiff immersed boundary method, J. Comput. Phys. 230, 51335153 (2011).Google Scholar
[5]Guermond, J. L., Minev, P. and Shen, J., An overview of projection methods for incompressible flows, Comput. Methods Appl. Mech. Engrg. 195, 60116045 (2006).Google Scholar
[6]Griffith, B. E. and Peskin, C. S., On the order of accuracy of the immersed boundary method: Higher order convergence rates for sufficiently smooth problems, J. Comput. Phys. 208, 75105 (2005).CrossRefGoogle Scholar
[7]Griffith, B. E., Hornung, R. D., McQueen, D. M. and Peskin, C. S., An adaptive, formally second order accurate version of the immersed boundary method, J. Comput. Phys. 223, 1049 (2007).Google Scholar
[8]Guy, R. D. and Philip, B., A multigrid method for a model of the implicit immersed boundary equations, Commun. Comput. Phys. 12, 378400 (2012).CrossRefGoogle Scholar
[9]Harlow, F. H. and Welsh, J. E., Numerical calculation of time-dependent viscous incompressible flow of fluid with a free surface, Phys. Fluids 8, 21812189 (1965).CrossRefGoogle Scholar
[10]Hou, T.Y. and Shi, Z., Removing the stiffness of elastic force from the immersed boundary method for the 2D Stokes equations, J. Comput. Phys. 227, 91389169 (2008).Google Scholar
[11]Hou, T. Y. and Shi, Z., An efficient semi-implicit immersed boundary method for the Navier-Stokes equations, J. Comput. Phys. 227, 89688991 (2008).CrossRefGoogle Scholar
[12]Hu, W.-F., Kim, Y. and Lai, M.-C., An immersed boundary method for simulating the dynamics of three-dimensional axisymmetric vesicles in Navier-Stokes flows, submitted for publication.CrossRefGoogle Scholar
[13]Kim, Y. and Lai, M.-C., Simulating the dynamics of inextensible vesicles by the penalty immersed boundary method, J. Comput. Phys. 229, 48404853 (2010).CrossRefGoogle Scholar
[14]Keller, S. R. and Skalak, R., Motion of a tank-treading ellipsoldal particle in a shear flow, J. Fluid Mech. 120, 2747 (1982).Google Scholar
[15]Kantsler, V. and Steinberg, V., Orientation and dynamics of a vesicle in tank-treading motion in shear flow, Phys. Rev. Lett. 95, 258101 (2005).CrossRefGoogle ScholarPubMed
[16]Kraus, M., Wintz, W., Seifert, U. and Lipowsky, R., Fluid vesicles in shear flow, Phys. Rev. Lett. 77, 36853688 (1996).Google Scholar
[17]Lai, M.-C. and Peskin, C. S., An immersed boundary method with formal second-order accuracy and reduced numerical viscosity, J. Comput. Phys. 160, 705719 (2000).Google Scholar
[18]Lai, M.-C., Tseng, Y.-H. and Huang, H., An immersed boundary method for interfacial flow with insoluble surfactant, J. Comput. Phys. 227, 72797293 (2008).Google Scholar
[19]Lai, M.-C., Hu, W.-F. and Lin, W.-W., A fractional step immersed boundary method for Stokes flow with an inextensible interface enclosing a solid particle, SIAM J. Sci. Comput. 34, B692B710 (2012).CrossRefGoogle Scholar
[20]Li, Z. and Lai, M.-C., New finite difference methods based on IIM for inextensible interfaces in incompressible flows, East Asian J. Appl. Math. 1, 155171 (2011).Google Scholar
[21]Mayo, A. A. and Peskin, C. S., An implicit numerical method for fluid dynamics problems with immersed elastic boundaries, Contemp. Math. 141, 261277 (1993).Google Scholar
[22]Mori, Y. and Peskin, C. S., Implicit second-order immersed boundary methods with boundary mass, Comput. Methods Appl. Mech. Engrg. 197, 20492067 (2008).CrossRefGoogle Scholar
[23]Newren, E. P., Fogelson, A. L., Guy, R. D. and Kirby, R. M., Unconditionally stable discretizations of the immersed boundary equations, J. Comput. Phys. 222, 702719 (2007).Google Scholar
[24]Newren, E. P., Fogelson, A. L., Guy, R. D. and Kirby, R. M., A comparison of implicit solvers for the immersed boundary equations, Comput. Methods Appl. Mech. Engrg. 197, 22902304 (2008).Google Scholar
[25]Notay, Y., An aggregation-based algebraic multigrid method, Electronic Transactions on Numerical Analysis 37, 123146 (2010).Google Scholar
[26]Peskin, C. S., Flow patterns around heart valves: A numerical method, J. Comput. Phys. 10, 220252 (1972).Google Scholar
[27]Peskin, C. S., The immersed boundary method, Acta Numerica 11, 139 (2002).Google Scholar
[28]Roma, A. M., Peskin, C. S. and Berger, M. J., An adaptive version of the immersed boundary method, J. Comput. Phys. 153, (1999), 509534.Google Scholar
[29]Stockie, J. M. and Wetton, B. R., Analysis of stiffness in the immersed boundary method and implications for time-stepping schemes, J. Comput. Phys. 154, 4164 (1999).Google Scholar
[30]Tu, C. and Peskin, C. S., Stability and instability in the computation of flows with moving immersed boundaries: A comparison of three methods, SIAM J. Sci. Stat. Comput. 13, 13611376 (1992).Google Scholar
[31]Veerapaneni, S. K., Gueyffier, D., Zorin, D. and Biros, G., A boundary integral method for simulating the dynamics of inextensible vesicles suspended in a viscous fluid in 2D, J. Comput. Phys. 228, 23342353 (2009).CrossRefGoogle Scholar
[32]Yang, X., Zhang, X., Li, Z. and He, G.-W., A smoothing technique for discrete delta functions with application to immersed bounary method in moving boundary simulations, J. Comput. Phys. 228, 78217836 (2009).Google Scholar
[33]Zhou, H. and Pozrikidis, C., Deformation of liquid capsules with incompressible interfaces in simple shear flow, J. Fluid Mech. 283, 175200 (1995).CrossRefGoogle Scholar