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The Characterization Of CaCO3 in a Geothermal Environment: A Sem/Tem-Eels Study

Published online by Cambridge University Press:  01 January 2024

Jin-Wook Kim ,
Toshihiro Kogure ,
Kiho Yang ,
Sang-Tae Kim ,
Young-Nam Jang ,
Hion-Suck Baik  and
Gill Geesey
Jin-Wook Kim*
Affiliation:
Department of Earth System Sciences, Yonsei University, 134 Shinchon-dong, Seodaemoon-gu, Seoul, 120-749, Korea
Toshihiro Kogure
Affiliation:
Department of Earth and Planetary Science, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan
Kiho Yang
Affiliation:
Department of Earth System Sciences, Yonsei University, 134 Shinchon-dong, Seodaemoon-gu, Seoul, 120-749, Korea
Sang-Tae Kim
Affiliation:
School of Geography and Earth Sciences, McMaster University, 1280 Main Street West, Hamilton, ON, Canada L8S 4K1
Young-Nam Jang
Affiliation:
Korea Institute of Geoscience and Mineral Resources, Daejeon, 305-350, Korea
Hion-Suck Baik
Affiliation:
Korea Basic Science Institute, 126-16, Anam-dong, Seongbuk-gu, Seoul, 136-713, Korea
Gill Geesey
Affiliation:
Department of Microbiology, Montana State University, Bozeman, Montana 59717-3210, USA
*
*E-mail address of corresponding author: [email protected]
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Abstract

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Mineralization of microbial biomass is a common phenomenon in geothermal habitats, but knowledge of the structure of the minerals formed in these environments is limited. A combination of spectroscopic, microscopic, and stable isotopic methods, as well as the chemical analysis of spring water, were employed in the present study to characterize calcium carbonate minerals deposited in filamentous cyanobacterial mats in different locations of La Duke hot spring, a circumneutral thermal feature near the north entrance of Yellowstone National Park, Montana, USA. Calcite was the primary crystalline mineral phase associated with biofilm-containing deposits closest to the source of the spring and the suspended microbial biomass in a pool further from the source. The carbonate minerals at all sites occurred as aggregated granules, ~2 μm in diameter, in close association with the microbial biomass. Only in the deposits closest to the source were the granules organized as laminated structures interspersed with microbial biomass. The calcium carbonate grains contained two distinct regions: a dense monolithic calcite core and a porous dendritic periphery containing organic matter (OM). Electron energy loss spectroscopy (EELS) indicated that the voids were infilled with OM and carbonates. The EELS technique was employed to distinguish the source of carbon in the organic matter and carbonate mixture. The studies of carbon isotope compositions of the calcium carbonates and the saturation indices for calcite in the spring waters suggest that processes (abiotic vs. biotic) controlling the carbonate formation may vary among the sampling sites.

Keywords

Calcium Carbonate PrecipitateCarbon IsotopeCyanobacterial MatElectron Energy Loss SpectroscopyFocused Ion BeamTransmission Electron Microscopy
Type
Article
Information
Clays and Clay Minerals , Volume 60 , Issue 5 , October 2012 , pp. 484 - 495
Copyright
Copyright © Clay Minerals Society 2012

References

Atekwana, E.A. Atekwana, E. Legall, F.D. and Krishnamurthy, R.V., 2004 Field evidence for geophysical detection of subsurface zones of enhanced microbial activity Geophysical Research Letters 31 1–5.CrossRefGoogle Scholar
Aloisi, G., 2008 The calcium carbonate saturation state in cyanobacterial mats throughout Earth’s history Geochimica et Cosmochimica Acta 72 6037–6060.CrossRefGoogle Scholar
Aloisi, G. Gloter, A. Krüger, M. Wallmann, K. Guyot, F. and Zuddas, P., 2006 Nucleation of calcium carbonate on bacterial nanoglobules Geology Society of America 34 1017–1020.Google Scholar
Arp, G. Reimer, A. and Reitner, J., 2001 Photosynthesis-induced biofilm calcification and calcium concentrations in Phanerozoic Oceans Science 292 1701–1704.CrossRefGoogle ScholarPubMed
Baronnet, A. Cuif, J.P. Dauphin, Y. Farre, B. and Nouet, J., 2008 Crystallization of biogenic Ca-carbonate within organo-mineral micro-domains Structure of the calcite prisms of the Pelecypod Pinctada margaritifera (Mollusca) at the submicron to nanometre ranges. Mineralogical Magazine 72 617–626.Google Scholar
Benzerara, K. Yoon, T.H. Menguy, N. Tyliszczak, T. Brown, G.E. Jr., 2005 Nanoscale environments associated with bioweathering of a Mg-Fe-pyroxene The National Academy of Sciences 102 979–982.CrossRefGoogle ScholarPubMed
Bethke, C.M., 1996 Geochemical Reaction Modeling: Concept and Applications New York Oxford University Press.CrossRefGoogle Scholar
Bethke, C.M., 1998 The Geochemist’s Workbench, Version 3.0: A Users Guide to Rxn, Act2, Tact, React, and Gtplot Urbana, Illinois, USA Hydrogeology Program, University of Illinois.Google Scholar
Bosak, T. and Newman, D.K., 2003 Microbial nucleation of calcium carbonate in the Precambrian Geology 31 577–580.2.0.CO;2>CrossRefGoogle Scholar
Casanova, J., 1986 East African rift stromatolites Sedimentation in the African Rifts 25 201–210.Google Scholar
Castanier, S. Métayer-Levrel, G.L. and Perthuisot, J.P., 1999 Ca-carbonates precipitation and limestone genesis - the microbiogeologist point of view Sedimentary Geology 126 9–23.CrossRefGoogle Scholar
Chafetz, H.S. and Folk, R.L., 1984 Travertines: depositional morphology and the bacterially constructed constituents Journal of Sedimentary Petrology 54 289–316.Google Scholar
Cummings, C.E. and McCarthy, H.M., 1982 Stable carbon isotope ratios in Astrangia danae: evidence for algal modification of carbon pools used in calcification Geochimica et Cosmochimica Acta 6 1125–1129.CrossRefGoogle Scholar
Dittrich, M. Muller, B. Mavrocordatos, D. and Wehrli, B., 2003 Induced calcite precipitation by cyanobacterium Synechococcus Acta Hydrochimica et Hydrobiologica 31 162–169.CrossRefGoogle Scholar
Folk, R.L. Chafetz, H.S. and Tiezzi, P.A., 1985 Bizarre forms of depositional and diagenetic calcite in hot spring travertines, central Italy Carbonate Cements 36 349–369.CrossRefGoogle Scholar
Ford, T.D. and Pedley, H.M., 1996 A review of tufa and travertine deposits of the world Earth-Science Reviews 41 117–175.CrossRefGoogle Scholar
Fouke, B.W. Farmer, J.D. Marais, D.J.D. Pratt, L. Sturchio, N.C. Burns, P.C. and Discipulo, M.K., 2000 Depositional facies and aqueous-solid geochemistry of travertine-depositing hot springs (Angel Terrace, Mammoth Hot Springs, Yellowstone National Park, U.S.A.) Journal of Sedimentary Research 70 565–585.CrossRefGoogle ScholarPubMed
Fouke, B.W. Bonheyo, G.T. Sanzenbacher, B. and Frias-Lopez, J., 2003 Partitioning of bacterial communities between travertine depositional facies at Mammoth Hot Springs, Yellowstone National Park, U.S.A Canadian Journal of Earth Sciences 40 1531–1548.CrossRefGoogle Scholar
Guo, L. Andrews, J. Riding, R. Dennis, P. and Dresser, Q., 1996 Possible microbial effects on stable carbon isotopes in hot-spring travertines Journal of Sedimentary Research 66 468–473.Google Scholar
Jacobson, R.L. and Usdowski, E., 1975 Geochemical controls on a calcite precipitating spring Contributions to Mineralogy and Petrology 51 65–74.CrossRefGoogle Scholar
Kameda, J. Saruwatari, K. Beaufort, D. and Kogure, T., 2008 Textures and polytypes in vermiform kaolins diagenetically formed in a sandstone reservoir: a FIB-TEM investigation European Journal of Mineralogy 20 199–204.CrossRefGoogle Scholar
Kandianis, M.T. Fouke, B.W. Johnson, R.W. Veysey, J. and Inskeep, W.P., 2008 Microbial biomass: A catalyst for CaCO3 precipitation in advection-dominated transport regimes Geological Society of America Bulletin 120 442–450.CrossRefGoogle Scholar
Kim, J.W. and Dong, H., 2011 Application of electron energy-loss spectroscopy (EELS) and energy-filtered transmission electron microscopy (EFTEM) to the study of mineral transformation associated with microbial Fe-reduction of magnetite Clays and Clay Minerals 59 176–188.CrossRefGoogle Scholar
Knorre, H.V. Krumbein, W.E., Riding, R.E. and Awramik, S.M., 2000 Bacterial calcification Microbial Sediments Berlin Springer 25–31.CrossRefGoogle Scholar
Kogure, T., 2003 A program to assist Kikuchi pattern analysis Journal of the Crystallographic Society of Japan 45 391–395.Google Scholar
McConaughey, T., 1989 13C and 18O isotopic disequilibrium in biological carbonates: I. patterns Geochimica et Cosmochimica Acta 53 151–162.CrossRefGoogle Scholar
McCrea, J.M., 1950 On the isotopic chemistry of carbonates and a paleotemperature scale The Journal of Chemical Physics 18 849–857.CrossRefGoogle Scholar
Merz-preib, M., Riding, R.E. and Awramik, S.M., 2000 Calcification in cyanobacteria Microbial Sediments Berlin Springer 50–56.CrossRefGoogle Scholar
Merz-Preib, M. and Riding, R., 1999 Cyanobacterial tufa calcification in two freshwater streams: ambient environment, chemical thresholds and biological processes Sedimentary Geology 126 103–124.CrossRefGoogle Scholar
Obst, M. Wehrli, B. and Dittrich, M., 2009 CaCO3 nucleation by cyanobacteria: laboratory evidence for a passive, surface-induced mechanism Geobiology 7 324–347.CrossRefGoogle ScholarPubMed
Obst, M. Dynes, J.J. Lawrence, J.R. Swerhone, G.D.W. Benzerara, K. Karunakaran, C. Kaznatcheev, K. Tyliszczak, T. and Hitchcock, A.P., 2009 Precipitation of amorphous CaCO3 (aragonite-like) by cyanobacteria: A STXM study of the influence of EPS on the nucleation process Geochimica et Cosmochimica Acta 73 4180–4198.CrossRefGoogle Scholar
Pentecost, A., 1985 Association of cyanobacteria with tufa deposits: identity, enumeration and nature of the sheath material revealed by histochemistry Geomicrobiology Journal 4 285–298.CrossRefGoogle Scholar
Pentecost, A., 2003 Cyanobacteria associated with hot spring travertines Canadian Journal of Earth Sciences 40 1447–1457.CrossRefGoogle Scholar
Pentecost, A. and Riding, R., 1986 Calcification in cyanobacteria Biomineralization in Lower Plants and Animals 30 73–90.Google Scholar
Pratt, B.R., 2001 Calcification of cyanobacterial filaments: Girvanella and the origin of lower Paleozoic lime mud Geological Society of America 29 763–766.Google Scholar
Reksten, K., 1990 Superstructures in calcite American Mineralogist 75 807–812.Google Scholar
Robbins, L.L. and Yates, K.K., 1998 Production of carbonate sediments by a unicellular green alga American Mineralogist 83 1503–1509.Google Scholar
Schultze-Lam, S. Fortina, D. Davisa, B.S. and Beveridge, T.J., 1996 Mineralization of bacterial surfaces Chemical Geology 132 171–181.CrossRefGoogle Scholar
Shiraishi, F. Reimer, A. Bissett, A. Beer, D. and Arp, G., 2008 Microbial effects on biofilm calcification, ambient water chemistry and stable isotope records in a highly supersaturated setting (Westerhöfer Bach, Germany) Palaeogeography, Palaeoclimatology, Palaeoecology 262 91–106.CrossRefGoogle Scholar
Shiraishi, F. Okumura, T. Takahashib, Y. and Kanoa, A., 2010 Influence of microbial photosynthesis on tufa stromatolite formation and ambient water chemistry, SW Japan Geochimica et Cosmochimica Acta 74 5289–5304.CrossRefGoogle Scholar
Stumm, W. and Morgan, J.J., 1996 Aquatic Chemistry: Chemical Equilibria and Rates in Natural Waters New York John Wiley and Sons.Google Scholar
Thompson, J.B. and Ferris, F.G., 1990 Cyanobacterial precipitation of gypsum, calcite, and magnesite from natural alkaline lake water American Mineralogist 18 995–998.Google Scholar
Weiss, I.M. Tuross, N. Addadi, L. and Weiner, S., 2002 Mollusc larval shell formation: amorphous calcium carbonate is a precursor phase for aragonite Journal of Experimental Zoology 293 478–491.CrossRefGoogle ScholarPubMed
Weisse, D.J. Cretzmeyer, J.W. Crespi, A.M. Howard, W.G. and Skarstad, P.M., 1993.Electrochemical cells with endof- service indicator United States patentGoogle Scholar
Whitton, B. A. and Potts, M., 2000 The Ecology of Cyanobacteria: their Diversity in Time and Space Dordrecht, The Netherlands Kluwer Academic Publishers 669 pp..Google Scholar
Yvon, K. Jeitschko, W. and Parthe, E., 1977 LAZY PULVERIX, a computer program, for calculating X-ray and neutron diffraction power patterns Journal of Applied Crystallography 10 73–74.CrossRefGoogle Scholar