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Adsorption of adenine, cytosine, uracil, ribose, and phosphate by Mg-exchanged montmorillonite

Published online by Cambridge University Press:  09 July 2018

H. Hashizume ,
S. van der Gaast  and
B. K. G. Theng
H. Hashizume*
Affiliation:
National Institute for Materials Science, 1-1 Namiki, Tsukuba 305-0044, Japan
S. van der Gaast
Affiliation:
Hugo de Grootstraat 37, 2311XK Leiden, The Netherlands
B. K. G. Theng
Affiliation:
Landcare Research, Private Bag 11-052, Palmerston North 4442, New Zealand
*
*E-mail: [email protected]
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Abstract

We have determined the adsorption of RNA components (adenine, cytosine, uracil, ribose and phosphate) by Mg2+-exchanged montmorillonite. The isotherms for adenine, cytosine and uracil were of the C-type, the amount adsorbed increasing linearly with the equilibrium solute concentration. All three nucleic acid bases were apparently adsorbed by coordination to Mg2+ ions through a water bridge. Very little ribose was adsorbed by Mg-exchanged montmorillonite. The isotherm for phosphate was of the L-type. The plateau value of about 0.012 mmol g–1 indicated that phosphate adsorbed on the edge surface of montmorillonite. At comparable solute concentrations, adsorption decreased in the order adenine > cytosine > uracil. This observation reflects differences in basicity, size, and aqueous solubility among the three compounds.

Keywords

Mg-exchanged montmorilloniteadsorptionnucleic acid basesriboseadeninecytosinephosphate
Type
Research Article
Information
Clay Minerals , Volume 45 , Issue 4 , December 2010 , pp. 469 - 475
Copyright
Copyright © The Mineralogical Society of Great Britain and Ireland 2010

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References

Aisawa, S., Hirahara, H., Ishiyama, K., Ogasawara, W., Umetsu, Y. & Narita, E. (2003) Sugar-anionic clay composite materials: intercalation of pentoses in layered double hydroxide. Journal of Solid Sate Chemistry, 174, 342–348.Google Scholar
Banin, A., Lawless, J.G., Mazzurco, J., Church, F.M., Margulies, L. & Orenberg, J.B. (1985) pH profile of the adsorption of nucleotides onto montmorillonite II. Adsorption and desorption of 5'-AMP in ironcalcium montmorillonite. Origins of Life and Evolution of the Biosphere, 15, 89–101.CrossRefGoogle ScholarPubMed
Benetoli, L.O. de, B., Santana, H.de., Zaia, C.T.B.V. & Zaiaf, D.A.M. (2008) Adsorption of nucleic acid bases on clay: an investigation using Langmuir and Freundlich isotherms and FT-IR spectroscopy. Monatshefte für Chemie, 139, 753–761.Google Scholar
Bernal, J.D. (1951) The Physical Basis of Life. Routledge & Kegan Paul, London.Google Scholar
Bowden, J.W., Posner, A.M. & Quirk, J.P. (1980) Adsorption and charging phenomena in variable charge soils. Pp. 147–166 in: Soils with Variable Charge (Theng, B.K.G., editor), New Zealand Society of Soil Science, Lower Hutt.Google Scholar
Brack, A. (2006) Clay minerals and the origins of life. Pp. 379–391 in: Handbook of Clay Science (Bergaya, F., Theng, B.K.G., & Lagaly, G., editors), Elsevier, Amsterdam.Google Scholar
Brigatti, M.F., Galan, E. & Theng, B.K.G. (2006) Structures and mineralogy of clay mineral. Pp. 19–86 in: Handbook of Clay Science (Bergaya, F., Theng, B.K.G., & Lagaly, G., editors), Elsevier, Amsterdam.Google Scholar
Cairns-Smith, A.G. & Hartman, H. (1986) Clay Minerals and the Origin of Life. Cambridge University Press, Cambridge, UK.Google Scholar
Cloos, P., Moreale, A., Broers, C. & Badot, C. (1979) Adsorption and oxidation of aniline and p-chloroani-line by montmorillonite. Clay Minerals, 14, 307–321.Google Scholar
Farmer, V.C. & Mortland, M.M. (1966) An infrared study of the coordination of pyridine and water to exchangeable cations in montmorillonite and saponite. Journal of the Chemical Society A, 344-351.Google Scholar
Ferris, J.P. (2005) Mineral catalysis and prebiotic synthesis: montmorillonite-catalyzed formation of RNA. Elements, 1, 145–149.Google Scholar
Ferris, J.P., Ertem, G. & Agarwal, V.K. (1989) Mineral catalysis of the formation of dimers of 5'-AMP in aqueous solution: the possible role of montmorillonite clays in prebiotic synthesis of RNA. Origins of Life and Evolution of the Biosphere, 19, 165–178.Google Scholar
Franchi, M., Ferris, J.P. & Gallori, E. (2003) Cations as mediators of the adsorption of nucleic acids on clay surfaces in prebiotic environments. Origins of Life and Evolution of the Biosphere, 33, 1–16.Google Scholar
Gallori, E., Blondi, E. & Branciamore, S. (2006) Looking for the primordial genetic honeycomb. Origins of Life and Evolution of the Biosphere, 36, 493–499.Google Scholar
Gilbert, W. (1986) The RNA world. Nature, 319, 618.CrossRefGoogle Scholar
Giles, C.H., MacEwan, T.H., Nakhwa, S.N. & Smith, D. (1960) Studies in adsorption. XI. A system of classification of solution adsorption isotherms and its use in diagnosis of adsorption mechanisms and in measurement of specific surface areas of solids. Journal of the Chemical Society, 3973-3993.Google Scholar
Giles, C.H., D'Silva, A.P. & Easton, I.A. (1974) A general treatment and classification of the solute adsorption isotherm. Part II. Experimental interpretation. Journal of Colloid and Interface Science, 47, 766–778.Google Scholar
Hall, P.L., Churchman, G.J. & Theng, B.K.G. (1985) Size distribution of allophane unit particles in aqueous suspentions. Clays and Clay Minerals, 33, 345–349.CrossRefGoogle Scholar
Hashizume, H. & Theng, B.K.G. (2007) Adenine, adenosine, ribose and 5'-AMP adsorption to allophane. Clays and Clay Minerals, 55, 599–605.Google Scholar
Hashizume, H., Shimomura, S., Yamada, H., Fujita, T., Nakazawa, H. & Akutsu, O. (1996) An X-ray diffraction system with controlled relative humidity and temperature. Powder Diffraction, 11, 288–289.Google Scholar
Hayes, M.H.B. & Mingelgrin, U. (1991) Interactions between small organic chemicals and soil colloidal constituents. Pp. 323–407 in: Interactions at the Soil Colloid-Soil Solution Interface (Bolt, G.H., De Boodt, M.F., Hayes, M.H.B. & McBride, M.B., editors), Kluwer Academic Publishers, Dordrecht.Google Scholar
Lailach, G.E., Thompson, T.D. & Brindley, G.W. (1968) Adsorption of pyrimidines, purines and nucleosides by Li-, Na-, Mg-, and Ca-montmorillonite (Clayorganic studies XII). Clays and Clay Minerals, 16, 285–293.Google Scholar
Lawless, J.G., Banin, A., Church, F.M., Mazzurco, J., Huff, R., Kao, J., Cook, A., Lowe, T. Orenberg, J.B. & Edelson, E. (1985) pH profile of the adsorption of nucleotides onto montmorillonite. I. Selected homoionic clays. Origins of Life and Evolution of the Biosphere, 15, 77–88.Google Scholar
MacEwan, D.M.C. & Wilson, M.J. (1980) Interlayer and intercalation complexes of clay minerals. Pp. 197–248 in: Crystal Structures of Clay Minerals and Their X-ray Identification (Brindley, G.W. & Brown, G., editors). Mineralogical Society Monograph, 5, London.Google Scholar
Muljadi, D., Posner, A.M. & Quirk, J.P. (1966) The mechanism of phosphate adsorption by kaolinite, gibbsite and pseudoboehmite. Journal of Soil Science, 17, 212–246.Google Scholar
Theng, B.K.G. (1974) The Chemistry of Clay-Organic Reactions; Adam Hilger, London.Google Scholar
Theng, B.K.G. & Yuan, G. (2008) Nanoparticles in the soil environment. Elements, 4, 395–399.Google Scholar
Theng, B.K.G., Russell, M., Churchman, G.J. & Parfitt, R.L. (1982) Surface properties of allophane, halloysite and imogolite. Clays and Clay Minerals, 30, 143–149.Google Scholar
Violante, A. & Pigna, M. (2002) Competitive sorption of arsenate and phosphate on different clay minerals and soils. Soil Science Society of America Journal, 66, 1788–1796.Google Scholar
Winter, D. & Zubay, G. (1995) Binding of adenine and adenosine-related compounds to the clay montmorillonite and the mineral hydroxyapatite. Origins of Life and Evolution of the Biosphere. 25, 61-81.Google Scholar
Zaug, A.J. & Cech, T.R. (1986) The intervening sequence RNA of tetrahymena is an enzyme. Science, 231, 470–475.Google Scholar