Hostname: page-component-586b7cd67f-vdxz6 Total loading time: 0 Render date: 2024-11-28T00:28:28.911Z Has data issue: false hasContentIssue false
  • English
  • Français

Advances in genetic mapping of the sorghum genome

Published online by Cambridge University Press:  20 March 2007

Yi Zhi-Ben ,
Sun Yi ,
Liang Xiao-Hong ,
Zhao Wei-Jun ,
Yan Min  and
Cui Li-Xia
Yi Zhi-Ben*
Affiliation:
Department of Chemistry and Environment Engineering, North University of China, Taiyuan030051, China
Sun Yi
Affiliation:
Shanxi Agri-biotechnology Research Center, Taiyuan030031, China
Liang Xiao-Hong
Affiliation:
Department of Chemistry and Environment Engineering, North University of China, Taiyuan030051, China
Zhao Wei-Jun
Affiliation:
Sorghum Institute, Shanxi Academy of Agricultural Sciences, Jinzhong030601, China
Yan Min
Affiliation:
Shanxi Agri-biotechnology Research Center, Taiyuan030031, China
Cui Li-Xia
Affiliation:
Department of Chemistry and Environment Engineering, North University of China, Taiyuan030051, China
*
*Corresponding author. E-mail: [email protected]
Get access Rights & Permissions [Opens in a new window]

Abstract

The construction of the sorghum (Sorghum bicolor L. Moench) molecular genetic linkage map started in the early 1990s. Molecular genetic maps with a high density of markers covering almost the entire sorghum genome have been completed and integration of a sorghum genetic and physical map is under way. The correlation between genetic linkage groups and relevant chromosomes was established and the locations of the important structures of chromosomes, such as centromeres, long and short arms, nucleolus organizer region (NOR), etc., have been identified on the linkage groups. Molecular cytogenetic mapping of each chromosome has been advanced substantially. With continuing progress in the field, sequencing of the full sorghum genome and study of sorghum functional genomics will be initiated soon.

Keywords

genetic mapgenomemolecular markersorghum
Type
Research Article
Information
Chinese Journal of Agricultural Biotechnology , Volume 3 , Issue 3 , December 2006 , pp. 155 - 161
Copyright
China Agricultural University and Cambridge University Press 2006

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Agrama, HA, Widle, GE, Reese, JC, Campbell, LR and Tuinstra, MR (2002) Genetic mapping of QTLs associated with greenbug resistance and tolerance in Sorghum bicolor. Theoretical and Applied Genetics 104: 1373–1378.CrossRefGoogle ScholarPubMed
Arumuganathan, K and Earle, ED (1991) Nuclear DNA content of some important plant species. Plant Molecular Biology Reporter 9: 208–218.CrossRefGoogle Scholar
Bhattramakki, D, Dong, J, Hart, GE and Chhabra, AK (2000) An integrated SSR and RFLP linkage map of Sorghum bicolor (L.) Moench. Genome 43: 988–1002.CrossRefGoogle ScholarPubMed
Binelli, G, Ginafranceschi, L, Pe, ME, et al. (1992) Similarity of maize and sorghum genome as revealed by maize RFLP probes. Theoretical and Applied Genetics 84: 10–16.CrossRefGoogle ScholarPubMed
Boivin, K, Deu, M, Rami, JF, Trouche, G and Hamon, P (1999) Towards a saturated sorghum map using RFLP and AFLP markers. Theoretical and Applied Genetics 98: 320–328.CrossRefGoogle Scholar
Bowers, JE, Abbey, C, Anderson, S, et al. (2003) A high-density genetic recombination map of sequence-tagged sites for sorghum, as a framework for comparative structural and evolutionary genomics of tropical grains and grasses. Genetics 165: 367–386.CrossRefGoogle ScholarPubMed
Childs, KL, Klein, RR, Klein, PE, Morishige, DT and Mullet, JE (2001) Mapping genes on an integrated sorghum genetic and physical map using cDNA selection technology. The Plant Journal 27: 243–255.CrossRefGoogle Scholar
Chittenden, LM, Shertz, KF, Lin, YR, Wing, RA and Paterson, AH (1994) A detailed RFLP map of Sorghum bicolor and S. propinquum, suitable for high-density mapping, suggests ancestral duplication of sorghum chromosomes or chromosomal segments. Theoretical and Applied Genetics 87: 925–933.CrossRefGoogle ScholarPubMed
Crasta, OR, Xu, WW and Rosenow, DT (1999) Mapping of post-flowering drought resistance traits in grain sorghum: association between QTLs influencing premature senescence and maturity. Molecular Genetics and Genomics 262: 579–588.CrossRefGoogle ScholarPubMed
Draye, X, Lin, YR, Qian, XY, et al. (2001) Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grain, using the sorghum genome as a foundation. Plant Physiology 125: 1325–1341.CrossRefGoogle ScholarPubMed
Dufour, P, Deu, M, Grivet, L, et al. (1997) Construction of a composite sorghum genome map and comparison with sugarcane, a related complex polyploid. Theoretical and Applied Genetics 94: 409–418.CrossRefGoogle Scholar
Haussmann, BIG, Mahalakshmi, V, Reddy, BVS, Seetharama, N, Hash, CT and Geiger, HH (2002) QTL mapping of stay-green in two sorghum recombinant inbred populations. Theoretical and Applied Genetics 106: 133–142.CrossRefGoogle ScholarPubMed
Hulbert, SH, Richter, TE, Axtell, JD and Bennetzen, JL (1990) Genetic mapping and characterization of sorghum and related crops by means of maize DNA probes. Proceedings of the National Academy of Sciences of the United States of America 87: 4251–4255.CrossRefGoogle ScholarPubMed
Islam-Faridi, MN, Childs, KL, Klein, PE, et al. (2002) A molecular cytogenetic map of sorghum chromosome 1: Fluorescence in situ hybridization analysis with mapped bacterial artificial chromosomes. Genetics 161: 345–353.CrossRefGoogle ScholarPubMed
Kebede, H, Subudhi, PK and Rosenow, DT (2001) Quantitative trait loci influencing drought tolerance in grain sorghum (Sorghum bicolor L. Moench). Theoretical and Applied Genetics 103: 266–276.CrossRefGoogle Scholar
Kim, JS, Childs, KL, Islam-Faridi, MN, et al. (2002) Integrated karyotyping of sorghum by in situ hybridization of landed BACs. Genome 45: 402–412.CrossRefGoogle ScholarPubMed
Kim, JS, Klein, PE, Klein, RR, Price, HJ, Mullet, JE and Stelly, DM (2005a) Molecular cytogenetic maps of sorghum linkage groups 2 and 8. Genetics 169: 955–965.CrossRefGoogle ScholarPubMed
Kim, JS, Klein, PE, Klein, RR, Price, HJ, Mullet, JE and Stelly, DM (2005b) Chromosome identification and nomenclature of Sorghum bicolor. Genetics 169: 1169–1173.CrossRefGoogle ScholarPubMed
Klein, PE, Klein, RR, Cartinhour, SW, et al. (2000) A high-throughput AFLP-based method for constructing integrated genetic and physical maps: progress toward a sorghum genome map. Genome Research 10: 789–809.CrossRefGoogle Scholar
Klein, RR, Rodriguez-Herrera, R, Schlueter, JA, Klein, PE, Yu, ZH and Rooney, WL (2001) Identification of genomic regions that affect grain-mould incidence and other traits of agronomic importance in sorghum. Theoretical and Applied Genetics 102: 307–319.CrossRefGoogle Scholar
Klein, PE, Klein, RR, Vrebalov, J and Mullet, J (2003) Sequence-based alignment of sorghum chromosome 3 and rice chromosome 1 reveals extensive conservation of gene order and one major chromosomal rearrangement. The Plant Journal 34: 605–621.CrossRefGoogle ScholarPubMed
Kong, L, Dong, J and Hart, GE (2000) Characteristics, linkage-map positions, and allelic differentiation of Sorghum bicolor (L.) Moench DNA simple-sequence repeats (SSRs). Theoretical and Applied Genetics 101: 438–448.CrossRefGoogle Scholar
Lin, YR, Schertz, KF and Paterson, AH (1995) Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population. Genetics 141: 391–411.CrossRefGoogle Scholar
Lin, YR, Zhu, L, Ren, S, Yang, J, Schertz, KF and Paterson, AH (1999) A Sorghum propinquum BAC library, suitable for cloning genes associated with loss-of-function mutations during crop domestication. Molecular Breeding 5: 511–520.CrossRefGoogle Scholar
Lin, YR, Draye, X, Qian, X, et al. (2000) Locus-specific contig assembly in highly duplicated genomes, using the BAC-RF method. Nucleic Acids Research 28: e23.CrossRefGoogle ScholarPubMed
Melake-Berhan, A, Hultert, SH, Butler, LG and Bennetzen, JL (1993) Structure and evolution of the genomes of Sorghum bicolor and Zea mays. Theoretical and Applied Genetics 86: 598–604.CrossRefGoogle Scholar
Menz, MA, Klein, RR, Mullet, JE, Obert, JA, Unruh, NC and Klein, DE (2002) A high-density genetic map of Sorghum bicolor (L.) Moench based on 2926 AFLP, RFLP, and SSR markers. Plant Molecular Biology 48: 483–499.CrossRefGoogle ScholarPubMed
Peng, Y, Schertz, KF, Cartinhour, S and Hart, GE (1999) Comparative genome mapping of Sorghum bicolor (L.) Moench using an RFLP map constructed in a population of recombinant inbred lines. Plant Breeding 118: 225–235.CrossRefGoogle Scholar
Pereira, MG and Lee, M (1995) Identification of genomic regions affecting plant height in sorghum and maize. Theoretical and Applied Genetics 90: 380–388.CrossRefGoogle ScholarPubMed
Price, HJ, Dillon, SL, Hodnett, G, Rooney, W, Ross, L and Johnston, JS (2005) Genome evolution in the genus sorghum (Poaceae). Annals of Botany 95: 219–227.CrossRefGoogle ScholarPubMed
Ragab, RA, Dronavalli, S, Saghai, Maroof MA and Yu, YG (1994) Construction of a sorghum RFLP linkage map using sorghum and maize DNA probes. Genome 37: 590–594.CrossRefGoogle ScholarPubMed
Subudhi, PK and Nguyen, HT (2000) Linkage group alignment of sorghum RFLP maps using a RIL mapping population. Genome 43: 240–249.CrossRefGoogle ScholarPubMed
Tao, YZ, Jodan, DR, Henzell, RG and McIntyre, CL (1998) Construction of a genetic map in a sorghum recombinant inbred line using probes from different sources and its comparison with other sorghum maps. Australian Journal of Agricultural Research 49, 729–736.CrossRefGoogle Scholar
Tao, YZ, Henzell, RG, Jordan, DR, Butler, DG, Kelly, AM and Mclntyre, CL (2000) Identification of genomic regions associated with stay green in sorghum by testing RILs in multiple environments. Theoretical and Applied Genetics 100: 1225–1232.CrossRefGoogle Scholar
Tuinstra, MR, Grote, EM, Goldsbrough, PB and Ejeta, G (1996) Identification of quantitative trait loci associated with pre-flowering drought tolerance in sorghum. Crop Science 36: 1337–1344.CrossRefGoogle Scholar
Tuinstra, MR, Grote, EM, Goldsbough, PB and Ejeta, G (1997) Genetic analysis of post-flowering drought tolerance and component of grain development in Sorghum bicolor (L.) Moench. Molecular Breeding 3: 439–448.CrossRefGoogle Scholar
Whitkus, R, Doebley, J and Lee, M (1992) Comparative genomes of sorghum and maize. Genetics 132: 1119–1130.CrossRefGoogle ScholarPubMed
Woo, SS, Jiang, J, Gill, BS, Paterson, AH and Wing, RA (1994) Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucleic Acids Research 22: 4922–4931.CrossRefGoogle ScholarPubMed
Xu, GW, Magill, CW, Shertz, KF and Hart, GE (1994) A RFLP linkage map of Sorghum bicolor (L.). Moench. Theoretical and Applied Genetics 89: 139–145.CrossRefGoogle ScholarPubMed
Xu, JC, Weerasuriya, YM and Bennetzen, JL (2001) Construction of genetic map in sorghum and mapping of the germination stimulant production gene response to Striga asiatica. Acta Genetica Sinica 28: 870–876 (in Chinese with English abstract).Google ScholarPubMed
Xu, WW, Subudhi, PK, Crasta, OR, Rosenow, DR, Mullet, JE and Nuyen, HT (2000) Molecular mapping of QTLs conferring stay-green in grain sorghum (Sorghum bicolor L. Moench). Genome 43: 461–469.CrossRefGoogle ScholarPubMed
Yuan, AP, Mao, X, Hou, AB, Zhang, FY and Li, RZ (2003) Advances in sorghum genomics. Biotechnology Bulletin 1: 8–12 (in Chinese with English abstract).Google Scholar
Zwick, MS, Islam-Faridi, MN, Zhang, HB, et al. (2000) Distribution and sequence analysis of the centromere-associated repetitive element CEN38 of Sorghum bicolor (Poaceae). American Journal of Botany 87(12): 1757–1764.CrossRefGoogle ScholarPubMed