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Applications of microsatellite markers in studies of genetics and breeding of fish

Published online by Cambridge University Press:  12 February 2007

Zhang Xiao-Gu ,
Tong Jin-Gou  and
Xiong Bang-Xi
Zhang Xiao-Gu
Affiliation:
College of Fisheries, Huazhong Agriculture University, Wuhan 430070, China College of Life Sciences, Jiujiang University, Jiujiang 332000, China
Tong Jin-Gou
Affiliation:
State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
Xiong Bang-Xi*
Affiliation:
College of Fisheries, Huazhong Agriculture University, Wuhan 430070, China
*
*Corresponding author. Email: [email protected]
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Abstract

The microsatellite, or short sequence repeat (SSR), is a powerful genetic marker, useful in many areas of fish genetics and breeding. Polymorphic microsatellite loci have been frequently applied to the analysis of genetic diversity, population genetic structure, and genomic mapping. These co-dominant markers have also been applied to the classification and systematics, parentage identification, germplasm conservation, and breeding programme of food fish.

Keywords

breedingfishgenetic diversitymicrosatellite
Type
Review Article
Information
Chinese Journal of Agricultural Biotechnology , Volume 3 , Issue 2 , August 2006 , pp. 83 - 87
Copyright
Copyright © China Agricultural University and Cambridge University Press 2006

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References

Adams, BK and Hutchings, JA (2003) Microgeographic population structure of brook charr: a comparison of microsatellite and mark–recapture data. Journal of Fish Biology 62: 517–533.CrossRefGoogle Scholar
Bartfai, R, Egedi, S, Yue, GH, et al. (2003) Genetic analysis of two common carp broodstocks by RAPD and microsatellite markers. Aquaculture 219: 157–167.CrossRefGoogle Scholar
Beacham, TD, Lapointe, M, Candy, JR, Miller, KM and Withler, RE (2004) DNA in action: rapid appliction of DNA variation to sockeye salmon fisheries management. Conservation Genetics 5: 411–416.CrossRefGoogle Scholar
Bernal, JH, Adcock, GJ, Hauser, L, Carvalho, GR and Smith, PJ (2003) Temporal stability of genetic population structure in the New Zealand snapper, Pagrus aurstus, and relationship to coastal currents. Marine Biology 142: 567–574.CrossRefGoogle Scholar
Bertotto, D, Cepollaro, F, Libertini, A, et al. (2005) Production of clonal founders in the European sea bass, Dicentrarchus labrax L., by mitotic gynogenesis. Aquaculture 246: 115–124.Google Scholar
Burridge, CP and Smolenski, AJ (2003) Lack of genetic divergence found with microsatellite DNA markers in the tarakihi Nemadactylus macropterus. New Zealand Journal of Marine and Freshwater Research 37: 223–230.CrossRefGoogle Scholar
Carleton, KL, Streelman, JT, Lee, BY, Garnhart, N, Kidd, M and Kocher, TD (2002) Rapid isolation of CA microsatellites from the tilapia genome. Animal Genetics 33: 140–144.CrossRefGoogle ScholarPubMed
Chistiakov, DA, Hellemans, B, Tsigenopoulos, CS, et al. (2004) Development and linkage relationships for new microsatellite markers of the sea bass (Dicentrarchus labrax L.). Animal Genetics 35: 53–57.CrossRefGoogle ScholarPubMed
Dong, S and Taniguchi, N (2003) Identification of clonal Plecoglossus altivelis using microsatellite DNA marker. Journal of Fisheries of China 27: 295–299 (in Chinese with English abstract).Google Scholar
Erico, O, Takuya, N, Yoshitomo, N, Takashi, S, Keiichi, M and Nobuaki, O (2005) Genetic linkage maps of two yellowtails (Seriola quinqueradiata and Seriola lalandi). Aquaculture 244: 41–48.Google Scholar
Estoup, A, Presa, P, Krieg, F, Vaiman, D and Guyomard, R (1993) (CT)n and (GT)n microsatellites: a new class of genetic markers for Salmo trutta L.(brown trout). Heredity 71: 488–496.CrossRefGoogle ScholarPubMed
Goff, DJ, Galvin, K, Katz, H, Westerfield, M, Lander, ES and Tabin, CJ (1992) Identification of polymorphic simple sequence repeats in the genome of the zebrafish. Genomics 14: 200–202.CrossRefGoogle ScholarPubMed
Hara, M and Sekino, M (2003) Efficient detection of parentage in a cultured Japanese flounder Paralichthys olivaceus using microsatellite DNA marker. Aquaculture 217: 107–114.CrossRefGoogle Scholar
Hauser, L, Adcock, GJ, Smith, PJ, Ramirez, JHB and Carvalho, GR (2002) Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus). Proceedings of the National Academy of Sciences, USA 99: 11742–11747.CrossRefGoogle Scholar
Henderson, AA and King, TL (2002) Novel microsatellite markers for Atlantic sturgeon (Acipenser oxyrinchus) population delineation and broodstock management. Molecular Ecology Notes 2: 437–439.CrossRefGoogle Scholar
Liang, LQ, Chang, YM, Dong, CZ and Sun, XW (2004) Genetic analysis for Hucho taimen in Wusuli River with microsatellite. Journal of Fisheries of China 28: 241–244 (in Chinese with English abstract).Google Scholar
Liu, JX, Zhou, L, Zhao, ZS and Gui, JF (2002) Studies on microsatellite markers of four artificially gynogenetic families in ornamental carp. Zoological Research 23: 97–105 (in Chinese with English abstract).Google Scholar
Lundrigan, TA, Reist, JD and Ferguson, MM (2005) Microsatellite genetic variation within and among Arctic charr (Salvelinus alpinus) from aquaculture and natural populations in North America. Aquaculture 244: 63–75.CrossRefGoogle Scholar
Mackiewicz, M, Fletcher, DE, Wilkins, SD, DeWoody, JA and Avise, JC (2002) A genetic assessment of parentage in a natural population of dollar sunfish (Lepomis marginatus) based on microsatellite markers. Molecular Ecology 11: 1877–1883.CrossRefGoogle Scholar
McConnell, SKJ, Leamon, J, Skibinski, DOF and Mair, GC (2001) Microsatellite markers from the Indian major carp species, Catla catla. Molecular Ecology Notes 1: 115–116.CrossRefGoogle Scholar
McLean, JE and Taylor, EB (2001) Resolution of population structure in a species with high gene flow: microsatellite variation in the eulachon (Osmeridae: Thaleichthys pacificus). Marine Biology 139: 411–420.Google Scholar
Nielsen, EE, Nielsen, PH, Meldrup, D and Hansen, MM (2004) Genetic population structure of turbot (Scophthalmus maximus L.) supports the presence of multiple hybrid zones for marine fishes in the transition zone between the Baltic Sea and the North Sea. Molecular Ecology 13: 585–595.CrossRefGoogle ScholarPubMed
O'Malley, KG, Abbey, CA, Ross, K and Gold, JR (2003) Microsatellite DNA markers for kinship analysis and genetic mapping in red drum, Sciaenops ocellatus (Sciaenidae, Teleostei). Molecular Ecology Notes 3: 155–158.CrossRefGoogle Scholar
O'Reill, PT, Canino, MF, Bailey, KM and Bentzen, P (2004) Inverse relationship between FST and microsatellite polymorphism in the marine fish, walleye Pollock (Theragra chalcogramma): implications for resolving weak population structure. Molecular Ecology 13: 1799–1814.CrossRefGoogle Scholar
Ozaki, A, Sakamoto, T, Khoo, S, et al. (2001) Quantitative trait loci (QTLs) associated with resistance/susceptibility to infectious pancreatic necrosis virus (IPNV) in rainbow trout (Oncorhynchus mykiss). Molecular Genetic Genomics 265: 23–31.Google ScholarPubMed
Porter, BA, Fiumera, AC and Avise, JC (2002) Egg mimicry and allopaternal care: two mate-attracting tactics by which nesting striped darter (Etheostoma virgatum) males enhance reproductive success. Behavioral Ecology and Sociobiology 51: 350–359.CrossRefGoogle Scholar
Shimoda, N, Knapid, EW, Ziniti, J, et al. (1999) Zebrafish genetic map with 2000 microsatellite markers. Genomics 58: 219–232.CrossRefGoogle ScholarPubMed
Spruell, P, Hemmingsen, AR, Howell, PJ, Kanda, N and Allendorf, FW (2003) Conservation genetics of bull trout: Geographic distribution of variation at microsatellite loci. Conservation Genetics 4: 17–29.CrossRefGoogle Scholar
Sun, XW and Liang, LQ (2000) A genetic linkage map of common carp. Journal of Fishery Sciences of China 7: 1–5 (in Chinese with English abstract).Google Scholar
Taylor, MI, Meardon, F, Turner, G, Seehausen, O, Mrosso, HDJ and Rico, C (2002) Characterization of tetranucleotide microsatellite loci in a Lake Victorian, haplochromine cichlid fish: a Pundamilia pundamilia × Pundamilia nyererei hybrid. Molecular Ecology Notes 2: 443–445.CrossRefGoogle Scholar
Tong, J, Wang, ZW, Wu, QJ, Yu, X and Chu, KH (2002) Cross-species amplification in silver carp and bighead carp with microsatellite primers of common carp. Molecular Ecology Notes 2: 245–248.CrossRefGoogle Scholar
Tong, J, Yu, X and Liao, X (2005) Characterization of a highly conserved microsatellite marker with utility potentials in cyprinid fishes. Journal of Applied Ichthyology 21: 232–235.CrossRefGoogle Scholar
Triantafyllidis, A, Abatzopoulos, TJ, Leonardos, J and Guyomard, R (2002) Microsatellite analysis of the genetic population structure of native and translocated Aristotle's catfish (Silurus aristotelis). Aquatic Living Resources 15: 351–359.CrossRefGoogle Scholar
Waldbieser, GC, Bosworth, BG, Nonneman, DJ and Wolters, WR (2001) A microsatellite-based genetic linkage map for channel catfish, Ictalurus punctatus. Genetics 158: 727–734.CrossRefGoogle ScholarPubMed
Was, A and Wenne, R (2002) Genetic differentiation in hatchery and wild sea trout (Salmo trutta) in the southern Baltic at microsatellite loci. Aquaculture 204: 493–506.CrossRefGoogle Scholar
Watanabe, T, Fujita, H, Yamasaki, K, Seki, S and Taniguchi, N (2004) Preliminary study on linkage mapping based on microsatellite DNA and AFLP markers using homozygous clonal fish in ayu (Plecoglossus altivelis). Marine Biotechnology 6: 327–334.CrossRefGoogle Scholar
Wennevik, V, Skaala, O, Titov, SF, Studyonov, I and Naevdal, G (2004) Microsatellite variation in populations of Atlantic salmon from north Europe. Environmental Biology of Fishes 69: 143–152.CrossRefGoogle Scholar
Yu, HT, Lee, YT, Huang, SW and Chiu, TS (2002) Genetic analysis of the populations of Japanese anchovy (Engraulidae: Engraulis japonicus) using microsatellite DNA. Marine Biotechnology 4: 471–479.CrossRefGoogle ScholarPubMed
Yue, GH and Orban, L (2002) Polymorphic microsatellites from silver crucian carp (Carassius auratus gibelio Bloch) and cross-amplification in common carp (Cyprinus carpio L.). Molecular Ecology Notes 2: 534–536.CrossRefGoogle Scholar
Zane, L, Bargelloni, L and Patarnello, T (2002) Strategies for microsatellite isolation: a review. Molecular Ecology 11: 1–16.CrossRefGoogle ScholarPubMed
Zhu, B, Chang, JB, Tan, XC, Yu, GL, Xiao, CX and Wu, ZQ (1999) Applicability of microsatellite DNA primers of lake sturgeon for the parentage analyzing of Chinese sturgeon. Acta Hydrobiology Sinica 23: 547–553 (in Chinese with English abstract).Google Scholar