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PS2 - 167 CIC Deficiency is Associated with Dysregulation of Genes Involved in Cell Adhesion and Developmental Processes

Published online by Cambridge University Press:  18 October 2016

V.G. LeBlanc*
Affiliation:
BC Cancer Agency Genome Sciences Centre
S. Chittaranjan
Affiliation:
BC Cancer Agency Genome Sciences Centre
M. Firme
Affiliation:
BC Cancer Agency Genome Sciences Centre
S.Y. Chan
Affiliation:
BC Cancer Agency Genome Sciences Centre
J. Song
Affiliation:
BC Cancer Agency Genome Sciences Centre
A. Lee
Affiliation:
BC Cancer Agency Genome Sciences Centre
S. Yip
Affiliation:
Departments of Pathology & Laboratory Medicine
M.A. Marra
Affiliation:
BC Cancer Agency Genome Sciences Centre Medical Genetics, University of British Columbia, Vancouver, BC
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Abstract

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Somatic mutations in the Capicua (CIC) gene were first identified in Type I low-grade gliomas (LGGs), which are characterized by 1p/19q co-deletions and IDH mutations. They are found at frequencies of ~50-70% in this glioma subtype, and have since been identified in ~40% of stomach adenocarcinomas (STADs) of the microsatellite instability (MSI) subtype; however, the role of these somatic mutations in malignancy has yet to be established. In Drosophila, CIC functions as a transcriptional repressor whose activity is inhibited upon activation of the mitogen-activated protein kinase (MAPK) signalling pathway. Though mammalian CIC appears to retain these functions, only three of its target genes have been established in human cells: ETV1, ETV4, and ETV5 (ETV1/4/5). To further probe CIC’s transcriptional network, we developed CIC knockout cell lines and performed transcriptomic and proteiomic analyses in these and in control cell lines expressing wild type CIC, identifying a total of 582 differentially expressed genes. We also used RNA-seq data from The Cancer Genome Atlas (TCGA) for Type I LGGs and STADs to perform additional differential expression analyses between CIC-deficient and CIC-expressing samples. Though gene-level overlap was limited between the three contexts, we found that CIC appears to regulate the expression of genes involved in cell-cell adhesion, metabolism, and developmental processes in all three contexts. These results shed light on the pathological role of CIC mutations and may help explain why these have been associated with poorer outcome within Type I LGGs.

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Copyright
Copyright © The Canadian Journal of Neurological Sciences Inc. 2016