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A modelling approach to quantify the influence of fine sediment deposition on biogeochemical processes occurring in the hyporheic zone

Published online by Cambridge University Press:  23 July 2012

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Abstract

Excessive sedimentation of fine particles on stream beds has been recognized as a major threat to running-water ecosystems. Deposition of fine sediments often affects hyporheic zone (HZ) functioning by (1) reducing hydrological exchanges at the water–sediment interface and by (2) increasing the organic matter (OM) content of surface sediments. These two factors usually occur concurrently to control biogeochemical processes in sediments. In the present study, experimental and modelling approaches were coupled to evaluate the contribution of these factors on the biogeochemical functioning of the HZ. We used a one-dimensional (1D) vertical model taking into account the hydrodynamic properties, the vertical distribution of the OM and the main microbial processes involved in OM processing (aerobic respiration, denitrification, nitrification and sulphate reduction). This Mobile-Immobile Model for Organic Matter (MIM-OM) model was calibrated and validated using experimental data (conservative tracer, dissolved oxygen and nitrate concentrations) obtained in filtration columns filled with a porous sedimentary matrix. Simulations showed that organic carbon content and Darcy velocity acted in concert to shape biogeochemical processes in stream sediments. The use of the MIM-OM model on data obtained in filtration columns impacted by fine sediment deposition indicated that the biodegradability of the OM (modified through the degradation parameter kPOC) also played a key role on biogeochemical processes occurring in sediments. In conclusion, the MIM-OM model appears as an efficient simulation tool to evaluate biogeochemical functioning in river sediments under different conditions (granulometry, quality of surface water and clogging).

Keywords

Mathematical modelinghyporheic zoneorganic carboncloggingbiogeochemistry
Type
Research Article
Information
Annales de Limnologie - International Journal of Limnology , Volume 48 , Issue 3 , 2012 , pp. 279 - 287
Copyright
© EDP Sciences, 2012

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References

Beschta, R.L. and Jackson, W.L., 1979. The intrusion of fine sediments into a stable gravel bed. J. Fish. Res. Board Can., 36, 204–210.CrossRefGoogle Scholar
Boulton, A.J., Findlay, S., Marmonier, P., Stanley, E.H. and Valett, H.M., 1998. The functional significance of the hyporheic zone in streams and rivers. Annu. Rev. Ecol. Syst., 29, 59–81.CrossRefGoogle Scholar
Buffington, J.M. and Tonina, D., 2009. Hyporheic exchange in mountain rivers II: effects of channel morphology on mechanics, scales, and rates of exchange. Geogr. Compass, 3, 1038–1062.CrossRefGoogle Scholar
Canavan, R.W., Slomp, C.P., Jourabchi, P., Van Cappellen, P., Laverman, A.M. and van den Berg, G.A., 2006. Organic mineralization in sediment of the coastal freshwater lake and response to salinization. Geochim. Cosmochim. Acta, 70, 2836–2855.CrossRefGoogle Scholar
Cokgör, E.U., Sözen, S., Orhon, D. and Henze, M., 1998. Respirometric analysis of activated sludge behaviour. I. Assessment of the readily biodegradable substrate. Water Res., 32, 461–475.CrossRefGoogle Scholar
Decaux, O., 2011. Transport-reactive in porous media applied to the hyporheic zone: evaluation and estimation of parameters from physical and reactive models. Master degree 2nd, Modelling and Biostatistics, University of Toulouse, France, 48 p.
Delmotte, S., 2007. Rôle de la bioturbation dans le fonctionnement biogéochimique de l'interface eau-sédiment: Modélisation de la diversité des transports biologiques et effets sur la diagénèse précoce des sédiments d'une retenue. PhD Thesis, Université Toulouse III – Paul Sabatier, 282 p. http://www.mad-environnement.com/pdf/Th%E8se_S_Delmotte.pdf
Fiadeiro, M.E. and Veronis, G., 1977. On weighted-mean schemes for the finite-difference approximation to the advection-diffusion equation. Tellus, 29, 512–522.CrossRefGoogle Scholar
Fischer, H., Wanner, S.C. and Pusch, M., 2002. Bacterial abundance and production in river sediments as related to the biochemical composition of particulate organic matter (POM). Biogeochemistry, 61, 37–55.CrossRefGoogle Scholar
Foulquier, A., Mermillod-Blondin, F., Malard, F. and Gibert, J., 2011. Response of sediment biofilm to increased dissolved organic carbon supply in groundwater artificially recharged with stormwater. J. Soils Sediments, 11, 382–393.CrossRefGoogle Scholar
Gaudet, J.P., Jegat, H., Vachaud, G. and Wierenga, P.J., 1977. Solute transfer with exchange between mobile and stagnant water, through unsaturated sand. Soil Sci. Soc. Am. J., 41, 665–671.CrossRefGoogle Scholar
Gayraud, S. and Philippe, M., 2003. Influence of bedsediment features on the interstitial habitat available for macroinvertebrates in 15 French streams. Int. Rev. Hydrobiol., 88, 77–93.CrossRefGoogle Scholar
Hancock, P.J., 2002. Human impacts on the stream-groundwater exchange zone. Environ. Manage., 29, 763–781.CrossRefGoogle ScholarPubMed
Lefebvre, S., Marmonier, P. and Pinay, G., 2004. Stream regulation and nitrogen dynamics in sediment interstices: comparison of natural and straightened sectors of a third-order stream. River Res. Appl., 20, 499–512.CrossRefGoogle Scholar
Mermillod-Blondin, F., Gaudet, J.-P., Gerino, M., Desrosiers, G., Jose, J. and Creuzé des Châtelliers, M., 2004. Relative influence of bioturbation and predation on organic matter processing in river sediments: a microcosm experiment. Freshwater Biol., 49, 895–912.CrossRefGoogle Scholar
Mermillod-Blondin, F., Mauclaire, L. and Montuelle, B., 2005. Use of slow filtration columns to assess oxygen respiration, consumption of dissolved organic carbon, nitrogen transformations, and microbial parameters in hyporheic sediments. Water Res., 39, 1687–1698.CrossRefGoogle ScholarPubMed
Mermillod-Blondin, F., Poggiale, J.-C., Tolla, C., Auger, P., Thuiller, W. and Creuzé des Châtelliers, M., 2008. Using a mathematical model to simulate the influence of tubificid worms (Oligochaeta) on oxygen concentrations in hyporheic sediments. Fundam. Appl. Limnol., 172/2, 135–145.CrossRefGoogle Scholar
Middelburg, J.J., Vlug, T. and van der Nat, F.J.W.A., 1993. Organic matter mineralization in marine systems. Glob. Planet. Change, 8, 47–58.CrossRefGoogle Scholar
Navel, S., Mermillod-Blondin, F., Montuelle, B., Chauvet, E., Simon, L. and Marmonier, P., 2011. Water-sediment exchanges control microbial processes associated with leaf litter degradation in the hyporheic zone: a microcosm study. Microb. Ecol., 61, 968–979.CrossRefGoogle ScholarPubMed
Nedwell, D.B., Walker, T.R., Ellisevans, J.C. and Clarke, A., 1993. Measurements of seasonal rates and annual budgets of organic carbon fluxes in an Antarctic coastal environment at Signy Island, South Orkney Islands, suggest a broad balance between production and decomposition. Appl. Environ. Microbiol., 59, 3989–3995.Google Scholar
Nogaro, G., Mermillod-Blondin, F., Montuelle, B., Boisson, J.-C., Bedell, J.-P., Ohannessian, A., Volat, B. and Gibert, J., 2007. Influence of a stormwater sediment deposit on microbial and biogeochemical processes in infiltration porous media. Sci. Total Environ., 377, 334–348.CrossRefGoogle ScholarPubMed
Nogaro, G., Datry, T., Mermillod-Blondin, F., Descloux, S. and Montuelle, B., 2010. Influence of streambed sediment clogging on microbial processes of the hyporheic zone. Freshwater Biol., 55, 1288–1302.CrossRefGoogle Scholar
Oeurng, C., Sauvage, S. and Sánchez-Pérez, J.M., 2011a. Assessment of hydrology, sediment and particulate organic carbon yield in a large agricultural catchment using SWAT model. J. Hydrol., 401, 145–153.CrossRefGoogle Scholar
Oeurng, C., Sauvage, S., Coynel, A., Maneux, E., Etcheber, H. and Sánchez-Pérez, J.-M., 2011b. Fluvial transport of total suspended sediments and organic carbon from a large agricultural catchment during flood events, southwest France. Hydrol. Process., 25, 2365–2378.CrossRefGoogle Scholar
Peyrard, D., Delmotte, S., Sauvage, S., Namour, P., Gerino, M., Vervier, P. and Sánchez-Pérez, J.M., 2011. Longitudinal transformation of nitrogen and carbon transport and in the hyporheic zone of an N-rich stream: a combined modelling and field study. Phys. Chem. Earth, 36, 599–611.CrossRefGoogle Scholar
Ramos, J.I., 1986. Numerical solution of reactive-diffusion systems. Part 2: Method of lines and implicit algorithms. Int. J. Comput. Math., 18, 141–161.CrossRefGoogle Scholar
Schälchli, U., 1992. The clogging of coarse gravel river beds by fine sediment. Hydrobiologia, 235/236, 189–197.CrossRefGoogle Scholar
Schoen, R., Gaudet, J.P. and Elrick, D.E., 1999. Modelling of solute transport in a large undisturbed lysimeter, during steady state water flux. J. Hydrol., 215, 82–93.CrossRefGoogle Scholar
Servais, P., Anzil, A. and Ventresque, C., 1989. Simple method for determination of biodegradable dissolved organic carbon in water. Appl. Environ. Microbiol., 55, 2732–2734.Google ScholarPubMed
Sheibley, R.W., Duff, J.H., Jackman, A.P. and Triska, F.J., 2003a. Inorganic nitrogen transformations in the bed of the Shingobee River, Minnesota: integrating hydrologic and biological processes using sediment perfusion cores. Limnol. Oceanogr., 48, 1129–1140.CrossRefGoogle Scholar
Sheibley, R.W., Jackman, A.P., Duff, J.H. and Triska, F.J., 2003b. Numerical modeling of coupled nitrification-denitrification in sediment perfusion cores from the hyporheic zone of the Shingobee River, MN. Adv. Water Res., 26, 977–987.CrossRefGoogle Scholar
US EPA (1991) Methods for Measuring the Acute Toxicity of Effluents and Receiving Waters to Freshwater and Marine Organisms (4th edn,), EPA/600/4-90/027, US Environmental Protection Agency, Washington, pp. 34–35.
Vähätalo, A.V., Aarnos, H. and Mäntyniemi, S., 2010. Biodegradability continuum and biodegradation kinetics of natural organic matter described by the beta distribution. Biogeochemistry, 37, 130–137.Google Scholar
Van Cappellen, P., and Wang, Y., 2006. Cycling of iron and manganese in surface sediments: a general theory for the coupled transport and reaction of carbon, oxygen, nitrogen, sulfur, iron and manganese. Am. J. Sci., 296, 197–243.CrossRefGoogle Scholar
Vannote, R.L., Minshall, G.W., Cummins, K.W., Sedell, J.R. and Cushing, C.E., 1980. The river continuum concept. Can. J. Fish. Aquat. Sci., 37, 130–137.CrossRefGoogle Scholar
Waters, T.F., 1995. Sediment in Streams: Sources, Biological Effects and Control, American Fisheries Society, Bethesda, MD, 251 p.Google Scholar
Wijsman, J.W.M., Herman, P.M.J., Middelburg, J.J. and Soetaert, K., 2002. A model for early diagenetic processes in sediments of the continental shelf of the Black Sea. Estuar. Coast. Shelf Sci., 54, 403–421.CrossRefGoogle Scholar
Wilczek, S., Fischer, H., Brunke, M. and Pusch, M.T., 2004. Microbial activity within a subaqueous dune in a large lowland river (River Elbe, Germany). Aquat. Microb. Ecol., 36, 83–97.CrossRefGoogle Scholar
Wood, P.J. and Armitage, P.D., 1997. Biological effects of fine sediment in the lotic environment. Environ. Manage., 21, 203–217.CrossRefGoogle ScholarPubMed