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Software-engineering challenges of building and deploying reusable problem solvers

Published online by Cambridge University Press:  14 October 2009

Martin J. O'Connor
Affiliation:
Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA
Csongor Nyulas
Affiliation:
Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA
Samson Tu
Affiliation:
Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA
David L. Buckeridge
Affiliation:
Department of Epidemiology and Biostatistics, McGill University, Montreal, Canada
Anna Okhmatovskaia
Affiliation:
Department of Epidemiology and Biostatistics, McGill University, Montreal, Canada
Mark A. Musen
Affiliation:
Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA

Abstract

Problem solving methods (PSMs) are software components that represent and encode reusable algorithms. They can be combined with representations of domain knowledge to produce intelligent application systems. A goal of research on PSMs is to provide principled methods and tools for composing and reusing algorithms in knowledge-based systems. The ultimate objective is to produce libraries of methods that can be easily adapted for use in these systems. Despite the intuitive appeal of PSMs as conceptual building blocks, in practice, these goals are largely unmet. There are no widely available tools for building applications using PSMs and no public libraries of PSMs available for reuse. This paper analyzes some of the reasons for the lack of widespread adoptions of PSM techniques and illustrate our analysis by describing our experiences developing a complex, high-throughput software system based on PSM principles. We conclude that many fundamental principles in PSM research are useful for building knowledge-based systems. In particular, the task–method decomposition process, which provides a means for structuring knowledge-based tasks, is a powerful abstraction for building systems of analytic methods. However, despite the power of PSMs in the conceptual modeling of knowledge-based systems, software engineering challenges have been seriously underestimated. The complexity of integrating control knowledge modeled by developers using PSMs with the domain knowledge that they model using ontologies creates a barrier to widespread use of PSM-based systems. Nevertheless, the surge of recent interest in ontologies has led to the production of comprehensive domain ontologies and of robust ontology-authoring tools. These developments present new opportunities to leverage the PSM approach.

Type
Research Article
Copyright
Copyright © Cambridge University Press 2009

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