Skip to main content Accessibility help
×
Hostname: page-component-78c5997874-mlc7c Total loading time: 0 Render date: 2024-11-02T23:50:10.206Z Has data issue: false hasContentIssue false

Chapter Eight - Adapting to environmental change

Published online by Cambridge University Press:  07 March 2020

Rachael E. Antwis
Affiliation:
University of Salford
Xavier A. Harrison
Affiliation:
University of Exeter
Michael J. Cox
Affiliation:
University of Birmingham
Get access

Summary

Unprecedented climate change, pollutants and habitat alterations are causing abiotic stress across all plants and animals. Global increases in temperature, as well as decreases in pH in the ocean, have already caused microbiome dysbiosis in a range of species, and previously commensal microbes have turned pathogenic in response to extreme environmental conditions. This will have far-reaching consequences for host survival and associated ecosystem functions. However, host microbiomes may actually be the key to buffering these unprecedented environmental changes. The host microbiome contains massive genetic potential, and their vast numbers, high turnover, wide metabolic scope and short generation times may afford opportunities for faster acclimatisation and adaptation. Examples of this already exist, although responses are likely to be highly context-dependent. It is becoming increasingly clear that preservation of the microbiome is likely to be the key to maintaining healthy ecosystems in an uncertain future. However, there are still large knowledge gaps in almost every area, which need to be urgently addressed so we can apply conservation efforts in a judicious manner.

Type
Chapter
Information
Microbiomes of Soils, Plants and Animals
An Integrated Approach
, pp. 154 - 181
Publisher: Cambridge University Press
Print publication year: 2020

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Addison, AL, Powell, JA, Six, DL, et al. (2013) The role of temperature variability in stabilizing the mountain pine beetle–fungus mutualism. Journal of Theoretical Biology, 335, 4050.Google Scholar
Antwis, RE, Haworth, RL, Engelmoer, DJP, et al. (2014) Ex situ diet influences the bacterial community associated with the skin of red-eyed tree frogs (Agalychnis callidryas). PLoS ONE, 9, e85563.CrossRefGoogle ScholarPubMed
Antwis, RE, Griffiths, SM, Harrison, XA, et al. (2017) Fifty important research questions in microbial ecology. FEMS Microbiology and Ecology, 93, fix044.Google Scholar
Apprill, A, Marlow, HQ, Martindale, MQ, et al.(2009) The onset of microbial associations in the coral Pocillopora meandrina. The ISME Journal, 3, 685699.Google Scholar
Aroca, R, Vernieri, P, Ruiz-Lozano, JM. (2008) Mycorrhizal and non-mycorrhizal Lactuca sativa plants exhibit contrasting responses to exogenous ABA during drought stress and recovery. Journal of Experimental Biology, 59, 20292041.Google Scholar
Aroca, R, Ruiz-Lozano, JM, Zamarreño, ÁM, et al. (2013) Arbuscular mycorrhizal symbiosis influences strigolactone production under salinity and alleviates salt stress in lettuce plants. Journal of Plant Physiology, 170, 4755.CrossRefGoogle ScholarPubMed
Babic, I, Roy, S, Watada, AE, et al. (1996) Changes in microbial populations on fresh cut spinach. Food Microbiology, 31, 107119.CrossRefGoogle ScholarPubMed
Bacon, CW, Glenn, AE, Yates, IE. (2008) Fusarium verticillioides: Managing the endophytic association with maize for reduced fumonisins accumulation. Toxin Reviews, 27, 411446.Google Scholar
Baker, AC, Starger, CJ, McClanahan, TR, et al. (2004) Coral reefs: Corals’ adaptive response to climate change. Nature, 430, 741.Google Scholar
Bálint, M, Bartha, L, O’Hara, RB, et al. (2015) Relocation, high-latitude warming and host genetic identity shape the foliar fungal microbiome of poplars. Molecular Ecology, 24, 235248.CrossRefGoogle ScholarPubMed
Ben-Haim, Y, Zicherman-Keren, M, Rosenberg, E. (2003) Temperature-regulated bleaching and lysis of the coral Pocillopora damicornis by the novel pathogen Vibrio coralliilyticus. Applied and Environmental Microbiology, 69, 42364242.CrossRefGoogle ScholarPubMed
Berasategui, A, Salem, H, Paetz, C, et al. (2017) Gut microbiota of the pine weevil degrades conifer diterpenes and increases insect fitness. Molecular Ecology, 26, 40994110.Google Scholar
Berendsen, RL, Pieterse, CMJ, Bakker, PAHM. (2012) The rhizosphere microbiome and plant health. Trends in Plant Science, 17, 478486.Google Scholar
Berg, G, Erlacher, A, Grube, M. (2014) Plant-associated microbial diversity: Human food and health issues. In: Lugtenberg, B. (Ed.) Principles of Plant–Microbe Interactions. Cham: Springer.Google Scholar
Berg, G, Rybakova, D, Grube, M, et al. (2016) The plant microbiome explored: Implications for experimental botany. Journal of Experimental Botany, 67, 9951002.Google Scholar
Berkelmans, R, van Oppen, MJH. (2006) The role of zooxanthellae in the thermal tolerance of corals: A ‘nugget of hope’ for coral reefs in an era of climate change. Proceedings of the Royal Society B: Biological Sciences, 273, 23052312.Google Scholar
Blaser, MJ, Cardon, ZG, Cho, MK, et al. (2016) Toward a predictive understanding of earth’s microbiomes to address 21st century challenges. mBio, 7, e00714–16.Google Scholar
Bourne, D, Iida, Y, Uthicke, S, et al. (2008) Changes in coral-associated microbial communities during a bleaching event. The ISME Journal, 2, 350363.Google Scholar
Bourne, DG, Morrow, KM, Webster, NS. (2016) Insights into the coral microbiome: Underpinning the health and resilience of reef ecosystems. Annual Review of Microbiology, 70, 317340.CrossRefGoogle ScholarPubMed
Bruno, JF, Selig, ER, Casey, KS, et al. (2007) Thermal stress and coral cover as drivers of coral disease outbreaks. PLoS Biology, 5, e124.Google Scholar
Buchner, P. (1965) Endosymbiosis of Animals with Plant Microorganisms. Geneva: Interscience Publishers Inc.Google Scholar
Buddemeier, RW, Fautin, DG. (1993) Coral bleaching as an adaptive mechanism – A testable hypothesis. BioScience, 43, 320326.Google Scholar
Burke, GR, McLaughlin, HJ, Simon, JC, et al. (2010) Dynamics of a recurrent Buchnera mutation that affects thermal tolerance of pea aphid hosts. Genetics, 186, 367577.Google Scholar
Callahan, MT, Micallef, SA, Buchanan, RL. (2017) Soil type, soil moisture, and field slope influence the horizontal movement of Salmonella enterica and Citrobacter freundii from floodwater through soil. Journal of Food Protection, 80, 189197.Google Scholar
Carpenter, KE, Abrar, M, Aeby, G, et al. (2008) One-third of reef-building corals face elevated extinction risk from climate change and local impacts. Science, 321, 560563.Google Scholar
Cerf-Bensussan, N, Gaboriau-Routhiau, V. (2010) The immune system and the gut microbiota: Friends or foes? Nature Reviews Immunology, 10, 735744.Google Scholar
Cervino, JM, Hayes, RL, Polson, SW, et al. (2004) Relationship of Vibrio species infection and elevated temperatures to yellow blotch/band disease in Caribbean corals. Applied and Environmental Microbiology, 70, 68556864.Google Scholar
Chakravarti, LJ, Beltran, VH, van Oppen, MJH. (2017) Rapid thermal adaptation in photosymbionts of reef-building corals. Global Change Biology, 23, 46754688.Google Scholar
Cheplick, GP. (2004) Recovery from drought stress in Lolium perenne (Poaceae): Are fungal endophytes detrimental? American Journal of Botany, 91, 19601968.Google Scholar
Chung, SH, Rosa, C, Scully, ED, et al. (2013) Herbivore exploits orally secreted bacteria to suppress plant defenses. Proceedings of the National Academy of Sciences, 110, 1572815733.CrossRefGoogle ScholarPubMed
Compant, S, Van Der Heijden, MGA, Sessitsch, A. (2010) Climate change effects on beneficial plant–microorganism interactions. FEMS Microbiology Ecology, 73, 197214.Google Scholar
Connell, JH. (1978) Diversity in tropical rain forests and coral reefs. Science, 199, 13021310.Google Scholar
D’Angelo, C, Hume, BCC, Burt, J, et al. (2015) Local adaptation constrains the distribution potential of heat-tolerant Symbiodinium from the Persian/Arabian Gulf. The ISME Journal, 9, 110.Google Scholar
Darwin’s Paradox (1842) The Structure and Distribution of Coral Reefs. Being the First Part of the Geology of the Voyage of the Beagle, Under the Command of Capt. Fitzroy, R.N. During the Years 1832 To 1836. Smith Elder and Co.Google Scholar
David, AS, Thapa-Magar, KB, Afkami, ME. (2018) Microbial mitigation–exacerbation continuum: A novel framework for microbiome effects on hosts in the face of stress. Ecology, 99, 517523.Google Scholar
Diaz, JM, Hansel, CM, Apprill, A, et al. (2016) Species-specific control of external superoxide levels by the coral holobiont during a natural bleaching event. Nature Communications, 7, 13801.CrossRefGoogle ScholarPubMed
Dimkpa, C, Weinand, T, Asch, F. (2009) Plant–rhizobacteria interactions alleviate abiotic stress conditions. Plant, Cell and Environment, 32, 16821694.Google Scholar
Dinan, TG, Cryan, JF. (2012) Regulation of the stress response by the gut microbiota: Implications for psychoneuroendocrinology. Psychoneuroendocrinology, 37, 13691378.Google Scholar
Dobbelaere, S, Vanderleyden, J, Okon, Y. (2003) Plant growth-promoting effects of Diazotrophs in the rhizosphere. Critical Reviews in Plant Sciences, 22, 107149.Google Scholar
Douglas, AE, Werren, JH. (2016) Holes in the hologeome: Why host–microbe symbioses are not holobionts. mBio, 7, e02099–15.CrossRefGoogle Scholar
Dunbar, HE, Wilson, ACC, Ferguson, NR, et al. (2007) Aphid thermal tolerance is governed by a point mutation in bacterial symbionts. PLoS Biology, 5, 10061015.Google Scholar
Fathi, MM, Ebeid, TA, Al-Homidan, I, et al. (2017) Influence of probiotic supplementation on immune response in broilers raised under hot climate. Immunology, Health and Disease, 58, 512516.Google Scholar
Fouad, OM, Essahibi, A, Benhiba, L, et al. (2014) Effectiveness of arbuscular mycorrhizal fungi in the protection of olive plants against oxidative stress induced by drought. Spanish Journal of Agricultural Research, 12, 763771.Google Scholar
Gagné-Bourque, F, Bertrand, A, Claessens, A, et al. (2016) Alleviation of drought stress and metabolic changes in timothy (Phleum pratense L.) colonized with Bacillus subtilis B26. Frontiers in Plant Science, 7, 584.Google Scholar
Garg, N, Bhandari, P. (2012) Influence of cadmium stress and arbuscular mycorrhizal fungi on nodule senescence in Cajanus cajan (L) Millsp. International Journal of Phytoremediation, 14, 6274.Google Scholar
Gamper, H, Hartwig, UA, Leuchtmann, A. (2005) Mycorrhizas improve nitrogen nutrition of Trifolium repens after 8 yr of selection under elevated atmospheric CO2 partial pressure. New Phytologist, 167, 531542.Google Scholar
Gehring, CA, Mueller, RC, Haskins, KE, et al. (2014) Convergence in mycorrhizal fungal communities due to drought, plant competition, parasitism, and susceptibility to herbivory: Consequences for fungi and host plants. Frontiers in Microbiology, 5, 306.Google Scholar
Gilbert, JA, Hill, R, Doblin, MA, et al. (2012) Microbial consortia increase thermal tolerance of corals. Marine Biology, 159, 17631771.Google Scholar
Goulet, TL. (2006) Most corals may not change their symbionts. Marine Ecology Progress Series, 321, 17.Google Scholar
Guadayol, Ò, Silbiger, NJ, Donahue, MJ, et al. (2014) Patterns in temporal variability of temperature, oxygen and pH along an environmental gradient in a coral reef. PLoS ONE, 9, e85213.CrossRefGoogle Scholar
Guerrero-Bosagna, C, Jensen, P. (2015) Globalisation, climate change and transgenerational epigenetic inheritance: Will our descendants be at risk? Clinical Epigenetics, 7, 8.Google Scholar
Hadaidi, G, Rӧthig, T, Yum, LK, et al. (2017) Stable mucus-associated bacterial communities in bleached and healthy corals of Porites lobate from the Arabian Seas. Scientific Reports, 7, 45362.Google Scholar
Hammer, TJ, Bowers, MD. (2015) Gut microbes may facilitate insect herbivory of chemically defended plants. Oecologia, 179, 114.CrossRefGoogle ScholarPubMed
Hardoim, PR, van Overbeek, LS, Berg, G, et al. (2015) The hidden world within plants: Ecological and evolutionary considerations for defining functioning of microbial endophytes. Microbiology and Molecular Biology Reviews, 79, 293320.Google Scholar
Hare, PD, Cress, WA. (1997) Metabolic implications of stress-induced proline accumulation in plants. Plant Growth Regulation, 21, 79102.Google Scholar
Harmon, JP, Moran, NA, Ives, AR. (2009) Species response to environmental change: impacts of food web interactions and evolution. Science, 323, 13471350.Google Scholar
Hartmann, AC, Baird, AH, Knowlton, N, et al. (2017) The paradox of environmental symbiont acquisition in obligate mutualisms. Current Biology, 27, 37113716.Google Scholar
Hoegh-Guldberg, O, Cai, R, Poloczanska, ES, et al. (2014) The Ocean Climate Change 2014: Impacts, Adaptation, and Vulnerability Part B: Regional Aspects Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change. New York, NY: Cambridge University Press.Google Scholar
Hoegh-Guldberg, O, Poloczanska, ES, Skirving, W, et al. (2017) Coral reef ecosystems under climate change and ocean acidification. Frontiers in Marine Science, 4, 158.Google Scholar
Hofmann, GE, Barry, JP, Edmunds, PJ, et al. (2010) The effect of ocean acidification on calcifying organisms in marine ecosystems: An organism-to-ecosystem perspective. Annual Review of Ecology, Evolution, and Systematics, 41, 127147.Google Scholar
Holden, WM, Reinert, LM, Hanlon, SM, et al. (2015) Development of antimicrobial peptide defenses of southern leopard frogs, Rana sphenocephala, against the pathogenic chytrid fungus, Batrachochytrium dendrobatidis. Developmental and Comparative Immunology, 48, 6575.CrossRefGoogle ScholarPubMed
Howells, EJ, Abrego, D, Meyer, E, et al. (2016) Host adaptation and unexpected symbiont partners enable reef-building corals to tolerate extreme temperatures. Global Change Biology, 22, 27022714.Google Scholar
Hughes, TP, Kerry, JT, Álvarez-Noriega, M, et al. (2017) Global warming and recurrent mass bleaching of corals. Nature, 543, 373377.Google Scholar
Hume, BCC, Voolstra, CR, Arif, C, et al. (2016) Ancestral genetic diversity associated with the rapid spread of stress-tolerant coral symbionts in response to Holocene climate change. Proceedings of the National Academy of Sciences, 113, 4416–21.Google Scholar
ISRS, International Society for Reef Studies. (2015) Consensus statement on climate change and coral bleaching. Available at www.openchannels.org/news/news/isrs-consensus-statement-climate-change-and-coral-bleaching-paris-climate-change-targets.Google Scholar
IPCC. (2007) Climate Change 2007: The Physical Science Basis. Cambridge: Cambridge University Press.Google Scholar
IPCC. (2013) IPCC, 2013: Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, edited by Stocker, T, Qin, D, Plattner, G, et al. New York, NY: Cambridge University Press.Google Scholar
Jacobs, JL, Sundin, GW. (2001) Effect of solar UV-B radiation on a phyllosphere bacterial community. Applied and Environmental Microbiology, 67, 54885496.Google Scholar
Jakobsen, I, Smith, SE, Smith, FA, et al. (2016) Plant growth responses to elevated atmospheric CO2 are increased by phosphorus sufficiency but not by arbuscular mycorrhizas. Journal of Experimental Botany, 67, 61736186.CrossRefGoogle Scholar
Jiménez, RR, Sommer, S. (2017) The amphibian microbiome: Natural range of variation, pathogenic dysbiosis, and role in conservation. Biodiversity and Conservation, 26, 763786.Google Scholar
Johnson, N, Rowland, D, Corkidi, L, et al. (2008) Plant winners and losers during grassland N-eutrophication differ in biomass allocation and mycorrhizas. Ecology, 89, 28682878.Google Scholar
Johnson, NC, Angelard, C, Sanders, IC, et al. (2013) Predicting community and ecosystem outcomes of mycorrhizal responses to global change. Ecology Letters, 16, 140153.Google Scholar
Kaisermann, A, de Vries, FT, Griffiths, RI, et al. (2017) Legacy effects of drought on plant–soil feedbacks and plant–plant interactions. New Phytologist, 215, 14131424.Google Scholar
Kapoor, R, Singh, N. (2017) Arbuscular mycorrhiza and reactive oxygen species. In: Wu, QS. (Ed.) Arbuscular Mycorrhizas and Stress Tolerance of Plants. Singapore: Springer.Google Scholar
Khanna, KK. (1986) Phyllosphere microflora of certain plants in relation to air pollution. Environmental Pollution Series A, 42, 191200.Google Scholar
Kikuchi, Y, Tada, A, Musolin, DL, et al. (2016) Collapse of insect gut symbiosis under simulated climate change. mBio, 7, e01578–16.Google Scholar
Kock, RA, Orynbayev, M, Robinson, S, et al. (2018) Saigas on the brink: Multidisciplinary analysis of the factors influencing mass mortality events. Scientific Advances, 4, eaao2314.Google Scholar
Kohl, KD, Yahn, J. (2016) Effects of environmental temperature on the gut microbial communities of tadpoles. Environmental Microbiology, 18, 15611565.Google Scholar
Kohl, KD, Brun, A, Magallanes, M, et al. (2017) Gut microbial ecology of lizards: Insights into diversity in the wild, effects of captivity, variation across gut regions and transmission. Molecular Ecology, 26, 11751189.Google Scholar
Koren, O, Rosenberg, E. (2006) Bacteria associated with mucus and tissues of the coral Oculina patagonica in summer and winter. Applied and Environmental Microbiology, 72, 52545259.Google Scholar
Koren, O, Rosenberg, E. (2008) Bacteria associated with the bleached and cave coral Oculina patagonica. Microbial Ecology, 55, 523529.Google Scholar
Krediet, CJ, Ritchie, KB, Paul, VJ, et al. (2013) Coral-associated micro-organisms and their roles in promoting coral health and thwarting diseases. Proceedings of the Royal Society B: Biological Sciences, 280, 20122328.Google Scholar
Krueger, T, Hawkins, TD, Becker, S, et al. (2015) Differential coral bleaching – Contrasting the activity and response of enzymatic antioxidants in symbiotic partners under thermal stress. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 190, 1525.Google Scholar
Kuhl, M, Cohen, Y, Dalsgaard, T, et al. (1995) Microenvironment and photosynthesis of zooxanthellae in scleractinian corals studied with microsensors for O2, pH and light. Marine Ecology Progress Series, 117, 159172.Google Scholar
Kumar, A, Dames, JF, Gupta, A, et al. (2014) Current developments in arbuscular mycorrhizal fungi research and its role in salinity stress alleviation: A biotechnological perspective. Critical Reviews in Biotechnology, 35, 461474.Google Scholar
Kushmaro, A, Loya, Y, Fine, M, et al. (1996) Bacterial infection and coral bleaching. Nature, 380, 396–396.Google Scholar
Kvennefors, ECE, Sampayo, E, Kerr, C, et al. (2012) Regulation of bacterial communities through antimicrobial activity by the coral holobiont. Microbial Ecology, 63, 605618.Google Scholar
Lawley, TD, Walker, AW. (2013) Intestinal colonization resistance. Immunology, 356, 111.Google Scholar
Lee, STM, Davy, SK, Tang, S-L, et al. (2017) Water flow buffers shifts in bacterial community structure in heat-stressed Acropora muricata. Scientific Reports, 7, 43600.Google Scholar
Lenoir, I, Fontaine, J, Sahraoui, AL-H. (2016) Arbuscular mycorrhizal fungal responses to abiotic stresses: A review. Phytochemistry, 123, 415.Google Scholar
Lesser, MP. (2006) Oxidative stress in marine environments: Biochemistry and physiological ecology. Annual Review of Physiology, 68, 253278.Google Scholar
Lewis, CL, Coffroth, MA. (2004) The acquisition of exogenous algal symbionts by an octocoral after bleaching. Science, 304, 14901492.Google Scholar
Littman, R, Willis, BL, Bourne, DG. (2011) Metagenomic analysis of the coral holobiont during a natural bleaching event on the Great Barrier Reef. Environmental Microbiology Reports, 3, 651660.Google Scholar
Liu, H, Chen, W, Wu, M, et al. (2017) Arbuscular mycorrhizal fungus inoculation reduces the drought-resistance advantage of endophyte-infected versus endophyte-free Leymus chinensis. Mycorrhiza, 27, 791799.Google Scholar
McDevitt-Irwin, JM, Baum, JK, Garren, M, et al. (2017) Responses of coral-associated bacterial communities to local and global stressors. Frontiers in Marine Science, 4, 262.Google Scholar
McFall-Ngai, M, Hadfield, MG, Bosch, TCG, et al. (2013) Animals in a bacterial world, a new imperative for the life sciences. Proceedings of the National Academy of Sciences, 110, 32293236.Google Scholar
Mendes, R, Kruijt, M, de Bruijn, I, et al. (2011). Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science, 332, 10971100.Google Scholar
Meron, D, Atias, E, Iasur Kruh, L, et al. (2011) The impact of reduced pH on the microbial community of the coral, Acropora eurystoma. The ISME journal, 5, 5160.Google Scholar
Meron, D, Rodolfo-Metalpa, R, Cunning, R,et al. (2012) Changes in coral microbial communities in response to a natural pH gradient. The ISME Journal, 6, 17751785.Google Scholar
Millar, NS, Bennett, AE. (2016) Stressed out symbiotes: Hypotheses for the influence of abiotic stress on arbuscular mycorrhizal fungi. Oecologia, 182, 625641.Google Scholar
Moran, NA, Yun, Y. (2015) Experimental replacement of an obligate insect symbiont. Proceedings of the National Academy of Sciences, 112, 20932096.CrossRefGoogle ScholarPubMed
Morrow, KM, Moss, AG, Chadwick, NE, et al. (2012) Bacterial associates of two Caribbean coral species reveal species-specific distribution and geographic variability. Applied and Environmental Microbiology, 78, 64386449.CrossRefGoogle ScholarPubMed
Muscatine, L. (1990) The role of symbiotic algae in carbon and energy flux in reef corals. In: Dubinsky, Z. (Ed.) Ecosystems of the World 25 Coral Reefs. Amsterdam: Elsevier Science BV.Google Scholar
Nath, M, Bhatt, D, Prasad, R, et al. (2017) Reactive oxygen species (ROS) metabolism and signaling in plant–mycorrhizal association under biotic and abiotic stress conditions. In: Varma, A, Prasad, R, Tuteja, N (Eds.) Mycorrhiza – Eco-Physiology, Secondary Metabolites, Nanomaterials. Cham: Springer International Publishing.Google Scholar
Noctor, G, Mhamdi, A. (2017) Climate change, CO2, and defense: The metabolic, redox and signalling perspectives. Trends in Plant Science, 22, 857870.Google Scholar
Ochoa-Hueso, R. (2017) Global change and the soil microbiome: A human-health perspective. Frontiers in Ecology and Evolution, 5, 71.Google Scholar
Oldroyd, GED, Murray, JD, Poole, PS, et al. (2011) The rules of engagement in the legume–rhizobial symbiosis. Annual Review of Genetics, 45, 119144.Google Scholar
Padilla-Gamiño, JL, Pochon, X, Bird, C, et al. (2012) From parent to gamete: Vertical transmission of Symbiodinium (Dinophyceae) ITS2 sequence assemblages in the reef building coral Montipora capitata. PLoS ONE, 7, e38440.Google Scholar
Parmesan, C, Yohe, G. (2003) A globally coherent fingerprint of climate change impacts across natural systems. Nature, 421, 3742.Google Scholar
Peixoto, RS, Rosado, PM, Leite, DC, et al. (2017) Beneficial microorganisms for corals (BMC): Proposed mechanisms for coral health and resilience. Frontiers in Microbiology, 8, 341.Google Scholar
Philippot, L, Raaijmakers, JM, Lemanceau, P, et al. (2013) Going back to the roots: The microbial ecology of the rhizosphere. Nature Reviews Microbiology, 11, 789799.Google Scholar
Pineda, A, Dicke, M, Pieterse, CMJ, et al. (2013) Beneficial microbes in a changing environment: Are they always helping plants to deal with insects? Functional Ecology, 27, 574586.Google Scholar
Pita, L, Rix, L, Slaby, BM, et al. (2018) The sponge holobiont in a changing ocean: From microbes to ecosystems. Microbiome, 6, 46.Google Scholar
Pogoreutz, C, Rädecker, N, Cárdenas, A, et al. (2017) Sugar enrichment provides evidence for a role of nitrogen fixation in coral bleaching. Global Change Biology, 23, 38383848.Google Scholar
Pogoreutz, C, Rädecker, N, Cárdenas, A, et al. (2018) Dominance of Endozoicomonas bacteria throughout coral bleaching and mortality suggests structural inflexibility of the Pocillopora verrucosa microbiome. Ecology and Evolution, 8, 22402252.Google Scholar
Prado, SS, Hung, KY, Daugherty, MP, et al. (2010) Indirect effects of temperature on stink bug fitness, via maintenance of gut-associated symbionts. Applied and Environmental Microbiology, 76, 12611266.Google Scholar
Preece, C, Peñuelas, J. (2016) Rhizodeposition under drought and consequences for soil communities and ecosystem resilience. Plant and Soil, 409, 117.Google Scholar
Quigley, KM, Willis, BL, Bay, LK. (2016) Maternal effects and Symbiodinium community composition drive differential patterns in juvenile survival in the coral Acropora tenuis. Royal Society Open Science, 3, 160471.Google Scholar
Quigley, KM, Warner, PA, Bay, LK, et al. (2018) Unexpected mixed-mode transmission and moderate genetic regulation of Symbiodinium communities in a brooding coral. Heredity, 121, 524536.Google Scholar
Rädecker, N, Pogoreutz, C, Voolstra, CR, et al. (2015) Nitrogen cycling in corals: The key to understanding holobiont functioning? Trends in Microbiology, 23, 490497.Google Scholar
Raina, J-B, Tapiolas, D, Willis, BL, et al. (2009) Coral-associated bacteria and their role in the biogeochemical cycling of sulfur. Applied and Environmental Microbiology, 75, 34923501.Google Scholar
Raiten, DJ, Aimone, AM. (2017) The intersection of climate/environment, food, nutrition and health: Crisis and opportunity. Current Opinion in Biotechnology, 44, 5262.Google Scholar
Randriamanana, TR, Nissinen, K, Ovaskainen, A, et al. (2018) Does fungal endophyte inoculation affect the responses of aspen seedlings to carbon dioxide enrichments? Fungal Ecology, 33, 2431.Google Scholar
Reinmuth-Selzle, K, Kampf, CJ, Lucas, K, et al. (2017) Air pollution and climate change effects on allergies in the anthropocene: Abundance, interaction, and modification of allergens and adjuvants. Environmental Science and Technology, 51, 41194141.Google Scholar
Remily, ER, Richardson, LL. (2006) Ecological physiology of a coral pathogen and the coral reef environment. Microbial Ecology, 51, 345352.Google Scholar
Reshef, L, Koren, O, Loya, Y, et al. (2006) The coral probiotic hypothesis. Environmental Microbiology, 8, 20682073.Google Scholar
Rico, L, Ogaya, R, Terradas, J, et al. (2014) Community structures of N2-fixing bacteria associated with the phyllosphere of a Holm oak forest and their response to drought. Plant Biology, 16, 586593.Google Scholar
Ritchie, KB. (2006) Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Marine Ecology Progress Series, 322, 114.Google Scholar
Rodriguez, R, Redman, R. (2008) More than 400 million years of evolution and some plants still can’t make it on their own: Plant stress tolerance via fungal symbiosis. Journal of Experimental Botany, 59, 11091114.Google Scholar
Rodriguez-Lanetty, M, Krupp, D, Weis, V. (2004) Distinct ITS types of Symbiodinium in Clade C correlate with cnidarian/dinoflagellate specificity during onset of symbiosis. Marine Ecology Progress Series, 275, 97102.Google Scholar
Rohwer, F, Seguritan, V, Azam, F, et al. (2002) Diversity and distribution of coral-associated bacteria. Marine Ecology Progress Series, 243, 110.Google Scholar
Romero-Olivares, AL, Allison, SD, Treseder, KK. (2017) Soil microbes and their response to experimental warming over time: A meta-analysis of field studies. Soil Biology and Biochemistry, 107, 3240.Google Scholar
Rosenberg, E, Ben-Haim, Y. (2002) Microbial diseases of corals and global warming. Environmental Microbiology, 4, 318326.Google Scholar
Rosenberg, E, Falkovitz, L. (2004) The Vibrio shiloi/Oculina patagonica model system of coral bleaching. Annual Review of Microbiology, 58, 143159.Google Scholar
Ruiz-Lozano, JM, Aroca, R, Zamarreño, ÁM, et al. (2016) Arbuscular mycorrhizal symbiosis induces strigolactone biosynthesis under drought and improves drought tolerance in lettuce and tomato. Plant, Cell & Environment, 39, 441452.Google Scholar
Russell, JB, Muck, RE, Weimer, PJ. (2009) Quantitative analysis of cellulose degradation and growth of cellulolytic bacteria in the rumen. FEMS Microbiology Ecology, 67, 183197.Google Scholar
Rypien, KL, Ward, JR, Azam, F. (2010) Antagonistic interactions among coral-associated bacteria. Environmental Microbiology, 12, 2839.Google Scholar
Sampayo, EM, Ridgway, T, Franceschinis, L, et al. (2016) Coral symbioses under prolonged environmental change: Living near tolerance range limits. Scientific Reports, 6, 36271.Google Scholar
Sánchez-Caňizares, C, Jorrin, B, Poole, PS, et al. (2017) Understanding the holobiont: The interdependence of plants and their microbiome. Current Opinion in Microbiology, 38, 188196.Google Scholar
Saona, NM, Albrechtsen, BR, Ericson, L, et al. (2010) Environmental stresses mediate endophyte–grass interactions in a boreal archipelago. Journal of Ecology, 98. 470479.Google Scholar
Saxena, B, Shukla, K, Giri, B. (2017) Arbuscular mycorrhizal fungi and tolerance of salt stress in plants. In: QS, Wu (Ed.) Arbuscular Mycorrhizas and Stress Tolerance of Plants. Singapore: Springer International Publishing, pp.6797.Google Scholar
Serrano, XM, Baums, IB, Smith, TB, et al. (2016) Long distance dispersal and vertical gene flow in the Caribbean brooding coral Porites astreoides. Scientific Reports, 6, 21619.Google Scholar
Sharp, KH, Ritchie, KB, Schupp, PJ, et al. (2010) Bacterial acquisition in juveniles of several broadcast spawning coral species. PLoS ONE, 5, e10898.Google Scholar
Sharp, KH, Distel, D, Paul, VJ. (2012) Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides. The ISME Journal, 6, 790801.Google Scholar
Shikano, I, Rosa, C, Tan, CW, et al. (2017) Tritrophic interactions: Microbe-mediated plant effects on insect herbivores. Annual Review of Phytopathology, 55, 313331.CrossRefGoogle ScholarPubMed
Shnit-Orland, M, Kushmaro, A. (2009) Coral mucus-associated bacteria: A possible first line of defense. FEMS Microbiology Ecology, 67, 371380.Google Scholar
Singh, BK, Trivedi, P. (2017) Microbiome and the future for food and nutrient security. Microbial Biotechnology, 10, 5053.Google Scholar
Smith, DJ, Sugget, DJ, Baker, NR. (2004) Is photoinhibition of zooxanthellae photosynthesis the primary cause of thermal bleaching in corals? Global Change Biology, 11, 111.Google Scholar
Staley, C, Kaiser, T, Gidley, ML, et al. (2017) Differential impacts of land-based sources of pollution on the microbiota of Southeast Florida coral reefs. Applied and Environmental Microbiology, 83, e03378–16.Google Scholar
Sweet, MJ, Bulling, MT. (2017) On the importance of the microbiome and pathobiome in coral health and disease. Frontiers in Marine Science, 4, 9.Google Scholar
Tang, J, Xu, L, Chen, X, et al. (2009) Interaction between C4 barnyard grass and C3 upland rice under elevated CO2: Impact of mycorrhizae. Acta Oecologia, 35, 227235.Google Scholar
Terrer, C, Vicca, S, Hungate, BA, et al. (2017) Mycorrhizal association as a primary control of the CO2 fertilisation effect. Science, 353, 7274.Google Scholar
Tolleter, D, Seneca, FOO, Denofrio, JC, et al. (2013) Coral bleaching independent of photosynthetic activity. Current Biology, 23, 17821786.Google Scholar
Torda, G, Donelson, JM, Aranda, M, et al. (2017) Rapid adaptive responses to climate change in corals. Nature Climate Change, 7, 627636.Google Scholar
Ueda, Y, Frindte, K, Knief, C, et al. (2016) Effects of elevated tropospheric ozone concentration on the bacterial community in the phyllosphere and rhizoplane of rice. PLoS ONE, 11, e0163178.Google Scholar
Vacher, C, Hampe, A, Porté, AJ, et al. (2016) The phyllosphere: Microbial jungle at the plant–climate interface. Annual Review of Ecology, Evolution, and Systematics, 47, 124.Google Scholar
van der Voort, M, Kempenaar, M, van Driel, M, et al. (2016) Impact of soil heat on reassembly of bacterial communities in the rhizosphere microbiome and plant disease suppression. Ecology Letters, 19, 375382.Google Scholar
Vega Thurber, R, Willner-Hall, D, Rodriguez-Mueller, B, et al. (2009) Metagenomic analysis of stressed coral holobionts. Environmental Microbiology, 11, 21482163.Google Scholar
Venn, A, Tambutté, E, Holcomb, M, et al. (2011) Live tissue imaging shows reef corals elevate pH under their calcifying tissue relative to seawater. PLoS ONE, 6, e20013.Google Scholar
Vorholt, JA. (2012) Microbial life in the phyllosphere. Nature Reviews Microbiology, 10, 828840.CrossRefGoogle ScholarPubMed
Wang, L, Shantz, AA, Payet, JP, et al. (2018) Corals and their microbiomes are differentially affected by exposure to elevated nutrients and a natural thermal anomaly. Frontiers in Marine Science, 5, 101.Google Scholar
Webster, NS, Negri, AP, Botté, ES, et al. (2016) Host-associated coral reef microbes respond to the cumulative pressures of ocean warming and ocean acidification. Scientific Reports, 6, 19324.Google Scholar
Wei, T, Ishida, R, Miyanaga, K, et al. (2014) Seasonal variations in bacterial communities and antibiotic-resistant strains associated with green bottle flies (Diptera: Calliphoridae). Applied Microbiology and Biotechnology, 98, 41974208.Google Scholar
Weis, VM. (2008) Cellular mechanisms of Cnidarian bleaching: Stress causes the collapse of symbiosis. The Journal of Experimental Biology, 211, 30593066.Google Scholar
Wernegreen, JJ. (2012) Mutualism meltdown in insects: Bacteria constrain thermal adaptation. Current Opinion in Microbiology, 15, 255262.Google Scholar
Yellowlees, D, Rees, TA, Leggat, W. (2008) Metabolic interactions between algal symbionts and invertebrate hosts. Plant, Cell and Environment, 31, 679694.Google Scholar
Young, VB. (2017) The role of the microbiome in human health and disease: An introduction for clinicians. BMJ, 356, j831.Google Scholar
Zaneveld, JR, Burkepile, DE, Shantz, AA, et al. (2016) Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales. Nature Communications, 7, 11833.Google Scholar
Zhao, Y, Chen, Y, Li, Z, et al. (2018) Environmental factors have a strong impact on the composition and diversity of the gut bacterial community of Chinese black honeybees. Journal of Asia–Pacific Entomology, 21, 261267.Google Scholar
Ziegler, M, Roik, A, Porter, A, et al. (2016) Coral microbial community dynamics in response to anthropogenic impacts near a major city in the central Red Sea. Marine Pollution Bulletin, 105, 629640.Google Scholar
Ziegler, M, Seneca, FO, Yum, LK, et al. (2017) Bacterial community dynamics are linked to patterns of coral heat tolerance. Nature Communications, 8, 18.Google Scholar
Zilber-Rosenberg, I, Rosenberg, E. (2008) Role of microorganisms in the evolution of animals and plants: The hologenome theory of evolution. FEMS Microbiology Reviews, 32, 723735.Google Scholar

Save book to Kindle

To save this book to your Kindle, first ensure [email protected] is added to your Approved Personal Document E-mail List under your Personal Document Settings on the Manage Your Content and Devices page of your Amazon account. Then enter the ‘name’ part of your Kindle email address below. Find out more about saving to your Kindle.

Note you can select to save to either the @free.kindle.com or @kindle.com variations. ‘@free.kindle.com’ emails are free but can only be saved to your device when it is connected to wi-fi. ‘@kindle.com’ emails can be delivered even when you are not connected to wi-fi, but note that service fees apply.

Find out more about the Kindle Personal Document Service.

Available formats
×

Save book to Dropbox

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Dropbox.

Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

Available formats
×