A retinoic acid binding protein isolated from the
lumen of the rat epididymis (ERABP) is a member of the
lipocalin superfamily. ERABP binds both the all-trans and
9-cis isomers of retinoic acid, as well as the synthetic
retinoid (E)-4-[2-(5,6,7,8)-tetrahydro-5,5,8,8-tetramethyl-2
napthalenyl-1 propenyl]-benzoic acid (TTNPB), a structural
analog of all-trans retinoic acid. The structure of ERABP
with a mixture of all-trans and 9-cis retinoic acid has
previously been reported. To elucidate any structural differences
in the protein when bound to the all-trans and 9-cis isomers,
the structures of all-trans retinoic acid–ERABP and
9-cis retinoic acid ERABP were determined. Our results
indicate that the all-trans isomer of retinoic acid adopts
an 8-cis structure in the binding cavity with no concomitant
conformational change in the protein. The structure of
TTNPB-ERABP is also reported herein. To accommodate this
all-trans analog, which cannot readily adopt a cis-like
structure, alternative positioning of critical binding
site side chains is required. Consequently, both protein
and ligand adaption are observed in the formation of the
various holo-proteins.