A multiproxy Holocene record from a bog in the Hudson Bay Lowlands, northern Ontario, Canada, was used to evaluate how ecohydrology relates to carbon accumulation. The study site is located at a somewhat higher elevation and on coarser grained deposits than the surrounding peatlands. This promotes better drainage and thus a slower rate of carbon accumulation relative to sites with similar initiation age. The rate of peat vertical accretion was initially low as the site transitioned from a marsh to a rich fen. These lower rates took place during the warmer temperatures of the Holocene thermal maximum, confirming the importance of hydrological controls limiting peat accretion at the local scale. Testate amoebae, pollen, and plant macrofossils indicate a transition to a poor fen and then a bog during the late Holocene, as the carbon accumulation rate and reconstructed water table depth increased. The bacterial membrane lipid biomarker indices used to infer paleotemperature show a summer temperature bias and appear sensitive to changes in peat type. The bacterial membrane lipid biomarker pH proxy indicates a rich to a poor fen and a subsequent fen to bog transition, which are supported by pollen, macrofossil, and testate amoeba records.

We investigated the ecology and paleoecology of testate amoebae in peatlands of the Colombian páramo to assess the use of testate amoebae as paleoenvironmental indicators. Objectives were to (1) identify environmental controls on testate amoebae, (2) develop transfer functions for paleoenvironmental inference, and (3) examine testate amoebae in a Holocene peat core and compare our findings with other proxy records. Results from 96 modern samples indicate that testate amoebae are sensitive to pH and surface moisture, and cross-validation of transfer functions indicates potential for paleoenvironmental applications. Testate amoebae from the Triunfo Peatland in the Central Cordillera provided a proxy record of pH and water-table depth for the late Holocene, and inferred changes were correlated with peat C/N measurements during most of the record. Comparison with a lake-level reconstruction suggests that at least the major testate amoeba–inferred changes were driven by climate. Our work indicates that testate amoebae are useful paleoenvironmental indicators in high-elevation tropical peatlands.

Understanding the long-term ecological dynamics of boreal forests is essential for assessment of the possible responses and feedbacks of forest ecosystems to climate change. New data on past forest dynamics and peatland development were obtained from a peat sequence in the southern Valdai Hills (European Russia) based on pollen, plant macrofossil, micro-charcoal, peat humification, and testate amoeba analyses. The results demonstrate a dominance of broadleaved forests in the study area from 7000–4000 cal yr BP. Picea was initially a minor component of this forest but increased in cover rapidly with climatic cooling beginning at 4000 cal yr BP, becoming the dominant species. Broadleaved species persisted until 900 cal yr BP, with evidence for intensified felling and forest management over recent centuries. Over the last four hundred years there is evidence for widespread paludification and the establishment of Picea-Sphagnum forests. These data demonstrate how modern wet woodlands have been shaped by a combination of climatic and anthropogenic factors over several millennia. The results also demonstrate the value of a multiproxy approach in understanding long-term forest ecology.

We discovered the first peat section covering the entire Holocene in the Hrubý Jeseník Mountains, representing an island of unique alpine vegetation whose history may display transitional features between the Hercynian and Carpathian regions. We analysed pollen, plant macrofossils (more abundant in bottom layers), testate amoebae (more abundant in upper layers), peat stratigraphy and chemistry. We found that the landscape development indeed differed from other Hercynian mountains located westward. This is represented by Pinus cembra and Larix during the Pleistocene/Holocene transition, the early expansion of spruce around 10,450 cal yr BP, and survival of Larix during the climatic optimum. The early Holocene climatic fluctuations are traced in our profile by species compositions of both the mire and surrounding forests. The mire started to develop as a calcium-rich percolation fen with some species recently considered to be postglacial relicts (Meesia triquetra, Betula nana), shifted into ombrotrophy around 7450 cal yr BP by autogenic succession and changed into a pauperised, nutrient-enriched spruce woodland due to modern forestry activities. We therefore concluded that its recent vegetation is not a product of natural processes. From a methodological viewpoint we demonstrated how using multiple biotic proxies and extensive training sets in transfer functions may overcome taphonomic problems.

Holocene climatic variability and human impact on vegetation are reconstructed from a region in central European Russia, which lies at an important ecotone between broadleaf forest and steppe. For the first time in this region we adopt a multi-proxy approach that combines analysis of local mire conditions from plant macrofossil and testate amoeba analyses with pollen-based quantitative climate reconstruction. The proxies indicate a long-term warming trend from 9700 to 7500 cal yr BP, interrupted by a series of short-term cold events. From 7500 to 5000 cal yr BP the results imply a relatively stable climate, warmer and drier than present, spanning the Holocene Thermal Maximum. Since 5000 cal yr BP the data suggest a change to cooler climate, but with centennial-scale variability. This shift at around 5000 cal yr BP is supported by extensive evidence from other sites. In the early Holocene, the region was occupied mainly by pine and birch forests. Broad-leafed forests of oak, lime and elm expanded after 7800 cal yr BP and remained dominant until the last few centuries. During the historical period, vegetation changes have been driven mainly by human activities.

Proxy-based sea-level reconstructions place the instrumentally observed rates of recent sea-level rise in a longer term context by providing data that extend the instrumental sea-level record into past centuries. This paper presents the first sea-level reconstructions based on analyses of testate amoebae, to test their ability to produce high-precision reconstructions of past sea level. We present two reconstructions for the past 100"yr from sites in Maine (USA) and Nova Scotia (Canada) based on short cores from salt marshes, and modern training data from North America and the United Kingdom. These are compared with tide-gauge records and reconstructions based on foraminifera from the same cores. The reconstructions show good agreement with both the tide-gauge data and the foraminifera-based reconstructions. The UK data perform well in predicting known elevations of North American surface samples and produce sea-level reconstructions very similar to those based on the North American data, suggesting the methodology is robust across large geographical areas. We conclude that testate amoebae have the potential to provide robust, higher precision sea-level reconstructions for the past few centuries if modern transfer functions are improved and core sites are located within the main zone of testate amoebae occurrence on the salt marsh.

Siberian peatlands provide records of past changes in the continental climate of Eurasia. We analyzed a core from Mukhrino mire in western Siberia to reconstruct environmental change in this region over the last 1300 years. The pollen analysis revealed little variation of local pine-birch forests. A testate amoebae transfer function was used to generate a quantitative water-table reconstruction; pollen, plant macrofossils, and charcoal were analyzed to reconstruct changes in vegetation and fire activity. The study revealed that Mukhrino mire was wet until the Little Ice Age (LIA), when drought was recorded. Dry conditions during the LIA are consistent with other studies from central and eastern Europe, and with the pattern of carbon accumulation across the Northern Hemisphere. A significant increase in fire activity between ca. AD 1975 and 1990 may be associated with the development of the nearby city of Khanty-Mansiysk, as well as with the prevailing positive Arctic Oscillation.

Peatlands are widely exploited archives of paleoenvironmental change. We developed and compared multiple transfer functions to infer peatland depth to the water table (DWT) and pH based on testate amoeba (percentages, or presence/absence), bryophyte presence/absence, and vascular plant presence/absence data from sub-alpine peatlands in the SE Swiss Alps in order to 1) compare the performance of single-proxy vs. multi-proxy models and 2) assess the performance of presence/absence models. Bootstrapping cross-validation showing the best performing single-proxy transfer functions for both DWT and pH were those based on bryophytes. The best performing transfer functions overall for DWT were those based on combined testate amoebae percentages, bryophytes and vascular plants; and for pH, those based on testate amoebae and bryophytes. The comparison of DWT and pH inferred from testate amoeba percentages and presence/absence data showed similar general patterns but differences in the magnitude and timing of some shifts. These results show new directions for paleoenvironmental research, 1) suggesting that it is possible to build good-performing transfer functions using presence/absence data, although with some loss of accuracy, and 2) supporting the idea that multi-proxy inference models may improve paleoecological reconstruction. The performance of multi-proxy and single-proxy transfer functions should be further compared in paleoecological data.

We investigated the developmental and hydrological history of a Sphagnum-dominated, kettle peatland in Upper Michigan using testate amoebae, plant macrofossils, and pollen. Our primary objective was to determine if the paleohydrological record of the peatland represents a record of past climate variability at subcentennial to millennial time scales. To assess the role of millennial-scale climate variability on peatland paleohydrology, we compared the timing of peatland and upland vegetation changes. To investigate the role of higher-frequency climate variability on peatland paleohydrology, we used testate amoebae to reconstruct a high-resolution, hydrologic history of the peatland for the past 5100 years, and compared this record to other regional records of paleoclimate and vegetation. Comparisons revealed coherent patterns of hydrological, vegetational, and climatic changes, suggesting that peatland paleohydrology responded to climate variability at millennial to sub-centennial time scales. Although ombrotrophic peatlands have been the focus of most high-resolution peatland paleoclimate research, paleohydrological records from Sphagnum-dominated, closed-basin peatlands record high-frequency and low-magnitude climatic changes and thus represent a significant source of unexplored paleoclimate data.

We examined the associations of microorganism assemblages with a complete mineral richness gradient spanning from extremely mineral-rich tufa-forming calcareous fens to mineral-poor acidic Sphagnum-fens. We also compared the distribution of two dominant taxa, testate amoebae and monogonont rotifers, among the sites differing in water chemistry and among three microhabitats sampled at each site differing in substrate and moisture conditions. Microorganism assemblages primarily changed in relation to the mineral richness gradient; moisture was the second most important factor structuring microorganism assemblages among microhabitats (i.e., wet bryophytes, submerged bryophytes and waterlogged bottom sediments). Densities of testate amoebae taxa and individuals were the highest in rich Sphagnum-fens, indicating a unimodal pattern along the mineral richness gradient. Numbers of testate amoebae taxa decreased notably in wet bryophytes, especially in poor Sphagnum-fens. This pattern might result from a strong effect of Sphagnum acidification due to minimal or no dilution of the acidic environment by mineral-rich groundwater. As a consequence, acid tolerant and relatively xerophilous taxa chiefly dominated in wet bryophytes of poor Sphagnum-fens, while poor Sphagnum-fen bottom sediments could provide a refuge for less tolerant and hydrophilous species. In contrast to testate amoebae, monogonont rotifers preferred bryophytes in all sites, with the number of monogonont taxa distinctly increasing from calcareous fens to poor Sphagnum-fens. In poor Sphagnum-fens, monogononts were the most abundant in wet bryophytes, probably due to reduced food competition and/or predaceous pressure resulting from the limited occurrence of other groups of microorganisms by virtue of the hostile acidic conditions in wet Sphagnum carpets.

Peatland testate amoebae are widely used to reconstruct paleohydrological/climatic changes, but many species are also known to respond to pollutants. Peatlands around the world have been exposed to anthropogenic and intermittent natural pollution through the late Holocene. This raises the question: can pollution lead to changes in the testate amoeba paleoecological record that could be erroneously interpreted as a climatic change? To address this issue we applied testate amoeba transfer functions to the results of experiments adding pollutants (N, P, S, Pb, O3) to peatlands and similar ecosystems. We found a significant effect in only one case, an experiment in which N and P were added, suggesting that pollution-induced biases are limited. However, we caution researchers to be aware of this possibility when interpreting paleoecological records. Studies characterising the paleoecological response to pollution allow pollution impacts to be tracked and distinguished from climate change.

The testate amoeba, ciliate and rotifera communities living in interstitial waters in peatbog in eastern Poland were studied. Sampling was done on a monthly basis from April to November 2007–2008. Microbial communities were examined in a transect including three sites: (1) pine forest (site located 5 m from the lagg/forest contact zone), (2) lagg, (3) open peatbog (the centre of the peatbog). At each of the sites, interstitial water was sampled by means of piezometric wells placed to a depth of 1 m. The species richness and abundance of protozoa and rotifers significantly differed between the studied stations, with the lowest numbers in the pine forest and the highest in the lagg. These differences between macro-habitats may be due to differences in environmental conditions. The distribution of samples in ordination space led to conclude that studied habitats are distributed along the falling gradient of pH and rising gradient of total organic carbon, water table depth and nitrate nitrogen. Assemblages of all three groups showed a strong compositional gradient correlated with water-table depth, conductivity and total phosphorus. However, species composition of ciliates and rotifers was explained by nitrate nitrogen and/or phosphates concentrations. The results suggest that lagg zone of a raised bog can fulfil the function of an ecotone zone, distinguished by a significant increase in biodiversity, abundance and species specificity of micro-organisms. It can also be a place of very efficient matter and energy flow in a peat bog ecosystem.

Testate amoebae (TA) are a group of free-living protozoa, important in ecology and paleoecology. Testate amoebae taxonomy is mainly based on the morphological features of the shell, as examined by means of light microscopy or (environmental) scanning electron microscopy (SEM/ESEM). We explored the potential applications of confocal laser scanning microscopy (CLSM), two photon excitation microscopy (TPEM), phase contrast, differential interference contrast (DIC Nomarski), and polarization microscopy to visualize TA shells and inner structures of living cells, which is not possible by SEM or environmental SEM. Images captured by CLSM and TPEM were utilized to create three-dimensional (3D) visualizations and to evaluate biovolume inside the shell by stereological methods, to assess the function of TA in ecosystems. This approach broadens the understanding of TA cell and shell morphology, and inner structures including organelles and endosymbionts, with potential implications in taxonomy and ecophysiology.

Six new marine species of the testate amoebid genus Paulinella are described using light and electron microscopic observations of material from Canada's Pacific Ocean coastal waters. In order of test (shell) size, from smallest to largest, the following new species are proposed: P. carsoni sp. nov., P. agassizi sp. nov., P. suzukii sp. nov., P. lauterborni sp. nov., P. multipora sp. nov. and P. gigantica sp. nov. Included in this survey are new observations on P. indentata Hannah, Rogerson & Anderson, from Canadian Pacific Ocean locations, but previously known only from Scottish coastal waters, and the common brackish/freshwater species P. chromatophora, from Ontario (Canada). These new discoveries more than double the number of previously known species of Paulinella, a genus significant for its role as a secondary producer in marine benthic ecosystems and for the possible role of its type species (P. chromatophora) as a model system for the endosymbiosis hypothesis of the evolution of chloroplast-bearing organisms.

Forty six taxa of testate amoebae were found in 45 samples of aquatic environments ranging from small pools to lakes. Four assemblages were distinguished which, to some degree, can be related ecologically to different pH ranges, and to differences in the habitat structure. The Nebela collaris assemblage occurs in acid pools mostly vegetated with mosses. The Centropyxis gibba gibbosa–Euglypha tuberculata–Difflugia globularis/globulus assemblage is found in the sediments of circumneutral to slightly alkaline lakes. Both of the other assemblages are mainly found in pools, which are more (for the Trinema assemblage) or less vegetated with mosses, in slightly acid (the Difflugia penardi–Centropyxis aerophila assemblage) or circumneutral to slightly alkaline (the Trinema lineare assemblage) conditions. A generic comparison with the Arctic fauna indicates differences, especially in the role of Difflugia as a dominant genus in aquatic habitats.

To study the relationships between groups of organisms and the degree to which these relationships are consistent across major climatic gradients, we analysed the testate amoeba (Protozoa) communities, vegetation and water chemistry of one peatland in five countries: Switzerland, The Netherlands, Great Britain, Sweden and Finland, as part of the BERI (Bog Ecosystem Research Initiative) project. The relationships between the different data sets and subsets were investigated by means of detrended correspondence analysis, canonical correspondence analysis and Mantel permutation tests. The comparison of data on vegetation and testate amoebae showed that inter-site differences are more pronounced for the vegetation than for the testate amoebae species assemblage. Testate amoebae are a useful tool in multi-site studies and in environmental monitoring of peatlands because: (1) the number of species in Sphagnum-dominated peatlands is much higher than for mosses or vascular plants; (2) most peatland species are cosmopolitan in their distributions and therefore less affected than plants by biogeographical distribution patterns, thus differences in testate amoeba assemblages can be interpreted primarily in terms of ecology; (3) they are closely related to the ecological characteristics of the exact spot where they live, therefore they can be used to analyse small-scale gradients that play a major role in the functioning of peatland ecosystems. This study revealed the existence of small-scale vertical gradients within the vegetation and life-form niche separation in response to water chemistry. The deep-rooted plants such as Carex spp. and Eriophorum spp. are related to the chemistry of water sampled at or near the ground water table, whereas the mosses are not. Testate amoebae were shown to be ecologically more closely related to the chemistry of water sampled at or near the water table level and to the mosses than to the deep-rooted plants.