The question of whether clay minerals can be biogenically transformed as a result of lichen activity at the lichen-rock interface remains unresolved. We applied several microscopical and analytical techniques—scanning electron microscopy-back-scattered electron (SEM-BSE), energy dispersive spectroscopy (EDS) and high-resolution transmission electron microscopy (HRTEM)—in an attempt to address this issue. Unaffected granitic biotite and bioweathered material from the granitic biotite and Parmelia conspersa lichen thalli interface were examined using HRTEM after ultrathin sectioning. The n-alkylammonium treatment of ultrathin sections was carried out in order to study the biogenous mineralogical transformation of the biotite. Microsamples proceeding from unaffected biotite zones demonstrated homogenous 10-Å d(001)-value biotite phase. HRTEM images of lattice fringes of samples taken from the lichen-biotite contact zone reveal large areas of both unexpanded (10-A) and randomly and R = 3 distributed expanded (from 14- to 30-Å) layers of phyllosilicates identified as interstratified biotite-vermiculite. Results of artificial biotite weathering (replacement of K by Ca ion) also revealed the biotite-vermiculite phase formation, indicating that K release in biotite is one of the mechanisms responsible for interstratified mineral phase formation. Two parallel processes, physical exfoliation of biotite and inter-layer ionic exchange of K and subsequent vermiculite formation, are the mechanisms for biotite bioweathering induced by lichens.

High-resolution transmission electron microscopy (HRTEM), selected-area electron diffraction (SAED), annular dark-field scanning transmission electron microscope (STEM) images, and electron nano-diffraction were used to examine structures of synthetic 2- and 6-line ferrihydrite specimens. HRTEM images of 2-line ferrihydrite (2LFh) show scattered small (~1-3 nm) areas with lattice fringes surrounded by areas free of fringes. All SAED patterns show two bright rings corresponding to d-values of ~0.15 and 0.25 nm; each ring has a conspicuous shoulder on each side. Faint rings corresponding to d-values of 0.08, 0.095, 0.100, 0.106-0.114 (very broad ring), and 0.122 nm are visible in strongly exposed SAED patterns. Nanodiffraction patterns show conspicuous streaks and a lack of superlattice formation.

HRTEM images of 6-line ferrihydrite (6LFh) display larger crystallites (typically ~5-6 nm) with lattice fringes visible in many thin areas. SAED patterns show rings corresponding to d-values of 0.148, 0.156, 0.176, 0.202, 0.227, and 0.25-0.26 nm and a shoulder extending between d-values of ~0.25 and 0.32 nm. Faint rings corresponding to d-values of 0.086, 0.093, 0.107, 0.112, 0.119, 0.125, and 0.135 nm are visible in strongly exposed SAED patterns. Small quantities of hematite, magnetite or maghemite, and an acicular material tentatively identified as goethite were observed in the 6-line ferrihydrite, but these quantities do not contribute significantly to the overall diffracted intensity from the sample.

The intercalating growth of new silicate layers or metal hydroxide layers in the interlayer space of other clay minerals is known from various mixed-layer clay minerals such as illite-smectite (I-S), chlorite-vermiculite, and mica-vermiculite. In a recent study, the present authors proposed that smectite-group minerals can be synthesized from solution as new 2:1 silicate layers within the low-charge interlayers of rectorite. That study showed how oxalate catalyzes the crystallization of saponite from a silicate gel at low temperatures (60ºC) and ambient pressure. As an extension of this work the aim of the present study was to test the claim that new 2:1 silicate layers can be synthesized as new intercalating layers in the low-charge interlayers of rectorite and whether oxalate could promote such an intercalation synthesis. Two experiments were conducted at 60ºC and atmospheric pressure. First, disodium oxalate solution was added to a suspension of rectorite in order to investigate the effects that oxalate anions have on the structure of rectorite. In a second experiment, silicate gel of saponitic composition (calculated interlayer charge -0.33 eq/O10(OH)2) was mixed with a suspension of rectorite and incubated in disodium oxalate solution. The synthesis products were extracted after 3 months and analyzed by X-ray diffraction and high-resolution transmission electron microscopy (HRTEM). The treatment of ultrathin sections with octadecylammonium (nC =18) cations revealed the presence of 2:1 layer silicates with different interlayer charges that grew from the silicate gel. The oxalate-promoted nucleation of saponite and talc crystallites on the rectorite led to the alteration and ultimately to the destruction of the rectorite structure. The change was documented in HRTEM lattice-fringe images. The crystallization of new 2:1 layer silicates also occurred within the expandable interlayers of rectorite but not as new 2:1 silicate layers parallel to the previous 2:1 silicate layers. Instead, they grew independently of any orientation predetermined by the rectorite crystal substrate and their crystallization was responsible for the destruction of the rectorite structure.

Technological opportunities are explored to enhance detection schemes in transmission electron microscopy (TEM) that build on the detection of single-electron scattering events across the typical spectrum of interdisciplinary applications. They range from imaging with high spatiotemporal resolution to diffraction experiments at the window to quantum mechanics, where the wave-particle dualism of single electrons is evident. At the ultimate detection limit, where isolated electrons are delivered to interact with solids, we find that the beam current dominates damage processes instead of the deposited electron charge, which can be exploited to modify electron beam-induced sample alterations. The results are explained by assuming that all electron scattering are inelastic and include phonon excitation that can hardly be distinguished from elastic electron scattering. Consequently, a coherence length and a related coherence time exist that reflect the interaction of the electron with the sample and change linearly with energy loss. Phonon excitations are of small energy (<100 meV), but they occur frequently and scale with beam current in the irradiated area, which is why we can detect their contribution to beam-induced sample alterations and damage.

Pedogenic alteration of illite from red earth sediments in Jiujiang in subtropical China was investigated using X-ray diffraction (XRD) and high-resolution transmission electron microscopy (HRTEM). Illite, hydroxy-interlayered vermiculite (HIV), kaolinite and mixed-layer illite-HIV (I-HIV) are present in the soils. The characteristic reflections of the clay phases were 14 Å, 10–14 Å, 10 Å, and 7 Å, respectively. After Mg-glycerol saturations, the 14 Å peak of the samples did not expand, and after heating at 350°C and 550°C it shifted to 13.8 Å and 12 Å respectively, with no residual 14 Å reflection, suggesting the occurrence of hydroxy-interlayered vermiculite. The randomly interstratified I-HIV clays were characterized by a broad peak at 10–14 Å, which did not change its position after Mg-glycerol saturation, but collapsed to 10 Å after heating at 350°C and 550°C. HRTEM analysis showed different lattice fringes of 12 Å, 10 Å and 7 Å . Mixed-layer I-HIV, HIV-K and illite-kaolinite (I-K) were observed in the HRTEM images which represented the intermediate phases during illite alteration. The merging of two 10 Å illite layers into a 12 Å HIV layer, lateral transformation of one HIV layer into one kaolinite layer and alteration of one illite layer into two kaolinite layers illustrated the mechanisms of illite-to-HIV, HIV-to-kaolinite and illite-tokaolinite transformation, respectively. The proposed pedogenic alteration of illite and the weathering sequence of the clay minerals in Jiujiang is illite → I-HIV → HIV → HIV-K → kaolinite. In addition, illite may transform directly to kaolinite.