The changes in abundance and biodiversity of deep-sea fish fauna are described based on an annual deep-water longline survey with data collected during the period 2015–2019 in the Basque Country continental Slope (ICES Division 8c). The sampling scheme included hauls in four 400 m strata, from 650–2250 m deep. The DST sensors installed in the main line have allowed us to set an accurate soak time for each haul, and they were used to calculate fishing effort and CPUE by haul. The catchability of the fishing gear indicated that 15% of the total hooks deployed in the five-year period were able to fish, and that the bottom longline was very effective in fishing a wide number of different species in all depth ranges. The fishing gear caught 14 different species of sharks (13 deepwater and one pelagic), two chimaeras and nine teleosts. The abundance and biomass registered on the hooks attached to the bottom were between three and four times higher than in the floating sections, and the highest CPUE and biomass were recorded between 1051–1450 m, from 2015 to 2017, and in the 1451–1850 m strata, but they do not show any clear trend throughout the five years of the series.

A short-term Jolly–Seber mark-recapture model experiment is described. This experiment was aimed at estimating the rate of catch per unit effort (CPUE) and the catchability coefficient (q) of the Atlantic blue crab (Callinectes sapidus) in the fishing port of Sisal, Yucatan, Mexico. To estimate the local population size, 52 traps were deployed along four transects located in a coastal capture area of 3600 m−2. The CPUE and q were compared between the daily mark-recapture Jolly–Seber experiment and the bi-monthly (carried out every 2 months) samplings. The average abundance was estimated at 3475 individuals. All three suggested scenarios, applied to estimate densities, gave similar estimates, i.e. 0.0386, 0.0350, 0.0365 crabs m−2 for the first (Previously Cited Attraction Radius), second (CPUE per transect) and third (Catchability-Density Relationship), respectively. Based on the latter scenario, densities ranged from 27,900 (annual average) to 36,500 (Spring) crabs km−2. The average CPUE of the daily mark-recapture experiment was estimated at 1.96 crabs trap−1, whereas the average bi-monthly CPUE was estimated at 1.13 crabs trap−1. The q (per trap) was estimated at 0.0186 for the daily mark-recapture experiment and at 0.0247 for the bi-monthly sampling. Both catchability and CPUE increased in individuals whose size ranged between 110 and 170 mm CW. However, no significant difference (ANCOVAs) was found between the daily and bi-monthly samplings neither in CPUE nor in catchability. The use of both mark-recapture data and the Jolly–Seber model proved to be a fast and reliable method for estimating the abundance and catchability of Atlantic blue crab.

Size frequency distribution, catch per unit effort (CPUE) and biomass of blue swimming crab Portunus segnis were studied in the northern Persian Gulf. A total of 1689 male and 1824 female crabs were collected by swept area method on a monthly basis from May 2010 to September 2012. The populations of male and female crabs were dominated by adult crabs (carapace width >100 mm) from December to May. The juvenile crabs were dominant from June to October and the averages of CPUE did uptrend from June to October. The CPUE increased in full moon and the highest value was observed in shallow coastal areas below 10 m and significantly decreased as depth increased. The maximum CPUE was recorded at 415 and 450 engine powers and the vessel speeds of about 2.5 and 2.8 knots. The monthly biomass estimations showed an upward trend from June to October within the study period, so that the maximum biomass was 110 tonnes in October 2011. Given the CPUE trend and biomass estimation, the results of the present study suggest that October is the optimum time as open fishery season for blue swimming crab in the northern Persian Gulf and the highest CPUE is achievable in shallow coastal areas at less than 10 m depth.

The western Mediterranean is an important fishing area in which the Spanish longline fleet operates. Longline fisheries affect several species of marine mammals, sea turtles, sharks and seabirds, all of which are especially sensitive to fishing mortality. Given international efforts to identify and reduce the bycatch of sensitive species, an onboard observer program was implemented by the Spanish Oceanographic Institute (IEO, Instituto Español de Oceanografía). The aim of the present study was to report data on marine mammal bycatch in the western Mediterranean. The additional aim was to improve knowledge about the possible effects of the Spanish longline fisheries on cetacean populations, particularly Risso’s dolphin, and to suggest improvements to fisheries management. Data on marine mammal bycatch were collected during the period 2000–2009. Differences are reported for catch per unit effort (CPUE, defined as marine mammals per 1000 hooks) for each type of gear (n = 7), as well as their effect on specific marine mammal species. A total of 5 398 297 hooks were monitored, which yielded 56 marine mammals belonging to 4 different species. Our results indicate that Risso’s dolphin is the species most affected by the longline fishery in the western Mediterranean (n = 33). We built a predictive model for Risso’s dolphin bycatch using variables associated with the technical characteristics of the fishery, geographic location and seasonality. We performed a binary logistic regression of the presence/absence of Risso’s dolphin bycatch to test whether the probability of incidentally catching one or more dolphins may be predicted by some of the explanatory variables selected. Our results indicate that Risso’s dolphin was mainly caught using Japanese longline (LLJAP) or an experimental home-based longline (LLHBexp) over the continental shelf. Because LLHBexp is an experimental type of gear that was only used occasionally by the fleet, controlling the use of LLJAP over the continental shelf could strongly reduce the impact of these fisheries on populations of Risso’s dolphin in the western Mediterranean.

Incidental catch or bycatch represents a significant threat for the conservation of seabird populations. The western Mediterranean is an important fishing area where the Spanish pelagic and semi-pelagic longline fleet targeting swordfish (Xiphias gladius), bluefin tuna (Thunnus thynnus) and albacore (Thunnus alalunga) operates. Bycatch of these fisheries includes several seabird species. Given the importance of conservation of the bycatch species (marine mammals, turtles, sharks and seabirds), an on-board observer program was implemented by the Spanish Oceanographic Institute (IEO); this included collecting data on effort and catch, as well as weight and number of individuals of the main bycatch species. The aim of the present study is to report data on seabird bycatch collected by the on-board observer program of the IEO in the Western Mediterranean. Data on seabird bycatch were collected for the period 2000-2008, throughout the year. Six longline gears targeting large pelagic fish were identified operating in the area of study, but only three had an effect on seabird species. Differences in catch per unit effort (CPUE, birds per 1000 hooks) for each gear, as well as their effect on particular seabird species, are reported in this study. A total of 4 786 466 hooks were monitored, which yielded 182 seabirds belonging to 7 different species. The average CPUE for the studied period was 0.038 birds per 1000 hooks. Cory’s shearwater (Calonectris diomedea) and yellow-legged gull (Larus michahellis) were the species the most highly represented in the catch. In contrast, Balearic shearwater (Puffinus mauretanicus) was only present in the longline fishery targeting albacore (CPUE = 0.005 birds per 1000 hooks). Our results suggest that Cory’s shearwater is the species the most affected by the longline fishery in the Western Mediterranean, probably due to its biological characteristics, and corroborate the well-established downward trend in its population.

The present study analyses the spatial and temporal distribution of the pelagic stingray (Pteroplatytrygon violacea) in the south-western Atlantic Ocean, based on data collected between April 1998 and March 2006 by the National Observers Program of the Uruguayan Tuna Fleet. During this period, data were recorded on 51 commercial fishing trips, in which a total of 2 306 851 hooks were set and 2740 stingrays captured. Of these, the sex was determined for 1329 individuals and the size for 944. The average disc width was 47 ± 8 cm (range: 24–82 cm) for females and 44 ± 5 cm (range: 28–84 cm) for males. The results indicate that the species seems to prefer warm temperate and tropical waters. There were no capture records in waters at <15.3 °C. The data collected suggest a mating season in late spring with a gestation period of 2 to 4 months and births occurring during late summer and early autumn. The increasing bycatch of this ovoviviparous species in pelagic longline fisheries, with an unknown survival rate after discard, coupled to its low reproductive potential, call for better monitoring in order to accurately determine its current conservation status.

To evaluate the population structure of Ucides cordatus in the Caeté estuary, crabs were sampled bimonthly over 13 months in three Rhizophora mangle forest stands that differed in their accessibility and fishing history. Additionally, sex- and size composition of the commercial catch and catch per unit of effort (CPUE – the number of crabs captured per fisherman per day) were monitored between 1997 and 2003. Average and maximum crab sizes (carapace width, CW) from all three sampling sites combined were 6.1 cm and 8.8 cm in males, respectively, and 5.5 and 7.3 cm in females. Crabs were largest at the site that had been reportedly less exploited in the past. The overall sex ratio was skewed towards males (53−62%). Egg carrying females were only encountered during the rainy season. Mean crab abundance and biomass was 1.7 specimens m−2 and 142 g m−2 fresh mass. Only large males were commercially harvested (98% ≥ 6.5 cm CW). Their biomass was 53 g m−2 and the Caeté estuary yields an annual production of 1200 t of these large specimens. This is approximately the quantity that is currently being harvested. CPUE was similar in 1997 and 1998, then decreased by 15% until 2000 and stabilized for the rest of the study period. Mean capture size (cm CW) ranged between 7.2 ± 0.5 and 7.5 ± 0.2 and was above the size of 50% (and even 100%) male maturity and the legal minimum capture size. There is no evidence that the Caeté crab population is overfished, despite over 30 years of de facto open access exploitation. Apparently, the selectivity of fishermen and consumers for large male crabs as well as the local artisanal capture techniques are key factors in preventing an overfishing of the Caeté crab population until today. Our results suggest that the economic and social sustainability of this fishery will be affected well before the biological one, which should be considered in the recently proposed coastal co-management plan for the region.

Intense local fishing pressure is likely to induce significant local decreases in both resource biomass and fishing yields. This is what we term ‘local overfishing’. Such a phenomenon and its consequences for stock assessment are investigated with the fisheries simulator SHADYS (Simulateur halieutique de dynamiques spatiales: spatialized simulator of fisheries dynamics). In SHADYS, resource dynamic is based on an advection–diffusion–reaction equation. After a brief presentation, the simulator is used to characterize the ‘local overfishing’ phenomenon as a ‘wound’ of the population. The latter is subsequently able to ‘heal’ and to recover its initial distribution. We show that, associated with cooperation tactics of the fishing fleets, local overfishing may induce non-linear relationships between catches per unit of effort (CPUE) and fishing effort calculated locally. In particular, it is shown that there is a strictly decreasing relationship between catchability and effort when fishing vessels apply intense local fishing pressure but do not cooperate; that the relationship may increase when vessels cooperate but do not apply intense local fishing pressures; and finally, that it may go through a maximum when, simultaneously, ships cooperate and have high local exploitation rates. These three main types of theoretical relationships correspond well with those observed in reality. The existence of such relationships could be an important source of biases in stock assessment.