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3 - Human and ape phylogenies

from Part I - Apes: their morphology and behaviour

Published online by Cambridge University Press:  05 January 2016

Peter Andrews
Affiliation:
Natural History Museum, London
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Summary

We have seen that the living apes share many characters with humans, and since the time of Darwin it has been generally recognized that they are our closest living relatives. Their morphology, however, does not demonstrate clearly which of the apes is our closest relative, and while the shared behaviours of chimpanzees and humans are suggestive, it is not conclusive proof of relationship. It has also been mentioned above that there is no known fossil ape that can unreservedly be shown to be ancestral of any living species of ape or human, as the evidence available from the known fossils is ambiguous, although it must be stressed that they provide much essential information on other aspects of ape evolution. The evidence for relationships comes from comparisons of living apes and humans with each other based on their morphology, behaviour and genes. It is this last line of evidence, the molecular biology of apes and humans, that will be covered in this chapter.

Morris Goodman set the application of genetic markers for human evolution on its way in the 1960s, and his book Molecular Anthropology was a landmark in primate phylogenetic studies. Goodman was very clear that humans were most closely related to African apes, but early methods lacked sufficient detail to differentiate between chimpanzees or gorillas as man's closest relative. Later work on immunological responses came to the same conclusion, but interestingly the level of responses of human with gorilla genetic markers was less than that with chimpanzee (1.09 for gorilla:human compared with 1.14 for chimpanzee:human, taking human:human as 1). For the first time, however, an attempt to put a date to the human/ape divergence was made, and assuming that immunological divergence increases at a constant rate, a date of 5 million years ago for the split was indicated. In the nearly 50 years since this figure was published, it has remained close to the centre of a range of values proposed by numerous studies, some older and some younger.

It was first proposed that chimpanzees and humans share almost 99% of their genome based on a measure of genetic distance. Almost more important than this conclusion was the observation that genetic distance did not coincide with observable morphological differences, and it was concluded from this that mutations alter the level of gene expression by modifying regulatory genes rather than changes in base pair substitutions.

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Publisher: Cambridge University Press
Print publication year: 2016

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References

Aiello, L. & Dean, C. 1990. An Introduction to Human Evolutionary Anatomy. Academic Press, New York.Google Scholar
Andrews, P. 1986. Fossil evidence on human origins and dispersal. In Watson, J.D., Editor. Molecular Biology of Homo sapiens, 419–428. Cold Spring Harbor Symposia on Quantitative Biology.Google Scholar
Andrews, P. 1987. Aspects of hominoid phylogeny. In Patterson, C., Editor, Molecules and Morphology in Evolution: Conflict or Compromise, 23–53. Cambridge, Cambridge University Press.Google Scholar
Andrews, P. & Harrison, T. 2005. The last common ancestor of apes and humans. In Lieberman, D.E., Smith, R.J. & Kelley, J., Editors, Interpreting the Past: Essays on Human, Primate, and Mammal Evolution in Honor of David Pilbeam, 103–121. Boston, Brill Academic Publishers, Inc.Google Scholar
Anon. 2005. The Chimpanzee Sequencing and Analysis Consortium 2005. Nature 437, 69–87.Google Scholar
Bradley, B.J. 2008. Reconstructing phylogenies and phenotypes: a molecular view of human evolution. Journal of Anatomy 212, 337–353.CrossRefGoogle ScholarPubMed
Caccone, A. & Powell, J.R. 1989. DNA divergence among hominoids. Evolution 43, 925–942.CrossRefGoogle ScholarPubMed
Caswell, J.L., Mallick, S., Richter, D.J. et al. 2008. Analysis of chimpanzee history based on genome sequence alignments. PLoS Genetics 4, 1–14.CrossRefGoogle ScholarPubMed
Disotell, T.R. 2006. ‘Chumanzee’ evolution: the urge to diverge and merge. Genome Biology 7, 240.CrossRefGoogle Scholar
Dubois, E. 1894. Pithecanthropus erectus, eine menschenähnliche übergangsform aus Java. Landsdrukkerij, Batavia, Batavuam Kabdesdrycjereu.Google Scholar
Endicott, P., Ho, S.Y.W., Metspalu, M. & Stringer, C. 2009. Evaluating the mitochondrial timescale of human evolution. Trends in Ecology and Evolution 24, 515–521.CrossRefGoogle ScholarPubMed
Figueirido, B., Janis, C., Pérez-Claros, J.A., Renzi, M. & Palmqvist, P. 2012. Cenozoic climate change influences mammalian evolutionary dynamics. Proceedings of the National Academy of Sciences 109, 722–727.CrossRefGoogle ScholarPubMed
Goodman, M. 1963. Man's place in the phylogeny of the primates as reflected in serum proteins. In Washburn, S.L., Editor, Classification and Human Evolution, 204–234. Chicago, Aldine.Google Scholar
Goodman, M. 1975. Protein sequence and immunological specificity: their role in phylogenetic studies of primates. In Luckett, W.P. & Szalay, F.S., Editors, Phylogeny of the Primates: A Multidisciplinary Approach, 219–248. New York, Plenum Press.Google Scholar
Goodman, M., Porter, C. A., Czelusniak, J. et al. 1998. Toward a phylogenetic classification of primates based on DNA evidence complemented by fossil evidence. Molecular Phylogenetics and Evolution 9, 585–598.CrossRefGoogle Scholar
Goodman, M., Tagle, D.A, Fitch, H.A. et al. 1990. Primate evolution at the DNA level and a classification of the hominoids. Journal of Molecular Evolution 30, 260–266.CrossRefGoogle Scholar
Goodman, M. & Tashian, R.E. (Editors) 1976. Molecular Anthropology. New York: Plenum Press.Google Scholar
Harrison, T. 2002. Late Oligocene to middle Miocene catarrhines from Afro-Arabia. In Hartwig, W.C., Editor, The Primate Fossil Record, 311–338. Cambridge, Cambridge University Press.Google Scholar
Hartwig, W.C. (Editor) 2002. The Primate Fossil Record. Cambridge, Cambridge University Press.Google Scholar
Hughes, J.F., Skaletsky, H., Pyntikova, T. et al. 2010. Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content. Nature 463, 536–539.CrossRefGoogle ScholarPubMed
Jones, S. 2008. Darwin's Island. London, Little Brown.Google Scholar
Kaessmann, H., Hellig, F., Haeseler, A. & Pääbo, S. 2001. Great ape DNA sequences reveal a reduced diversity and an expansion in humans. Nature Genetics 27, 78–81.CrossRefGoogle ScholarPubMed
Kaessmann, H.Wiebe, V. & Paabo, S. 1999. Extensive nuclear DNA sequence diversity among chimpanzees. Science 286, 1159–1162.CrossRefGoogle ScholarPubMed
Kaessmann, H., Wiebe, V., Weiss, G. & Pääbo, S. 1999. DNA sequence variation in a non-coding region of low recombination on the human X chromosome. Nature Genetics 22, 778–781.CrossRefGoogle Scholar
King, M.-C. & Wilson, A.C. 1975. Evolution at two levels in humans and chimpanzees. Science 188, 107–116.CrossRefGoogle ScholarPubMed
Langergraber, K.E., Prufer, K., Rowney, C. et al. 2012. Generation times in wild chimpanzees and gorillas suggest earlier divergence times in great ape and human evolution. Proceedings of the National Academy of Sciences 109, 15716–15721.CrossRefGoogle ScholarPubMed
Locke, D.P., Hillier, L.W., Warren, W.C. et al. 2011. Comparative and demographic analysis of orang-utan genomes. Nature 469, 529–533.CrossRefGoogle ScholarPubMed
Miyamoto, M.M. & Goodman, M. 1990. DNA systematics and evolution of primates. Annual Review of Ecology and Systematics 2, 197–220.Google Scholar
Miyamoto, M.M., Slightom, J.L. & Goodman, M. 1987. Phylogenetic relationships of humans and African apes from DNA sequences in the ψη-globin region. Science 238, 369–373.CrossRefGoogle Scholar
Orlando, L., Ginolhac, A., Zhang, G. et al. 2013. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature online, 499(7456), 74–78.
Patterson, C. (Editor) 1987. Molecules and Morphology in Evolution: Conflict or Compromise. Cambridge, Cambridge University Press.Google Scholar
Patterson, N., Richter, D.J., Gnerre, S., Lander, E.S. & Reich, D. 2006. Genetic evidence for complex speciation of humans and chimpanzees. Nature 441, 1103–1108.CrossRefGoogle ScholarPubMed
Pozzi, L, Hodgson, J.A., Burrell, A.S. & Disotell, T.R. 2011. The stem catarrhine Saadanius does not inform the timing of the origin of the Crown Catarrhines. Journal of Human Evolution 61, 209–210.CrossRefGoogle Scholar
Prüfer, K., Kelso, J., Paabo, S. et al. 2012. The bonobo genome compared with the chimpanzee and human genomes. Nature, 486(7404), 527–531.CrossRefGoogle ScholarPubMed
Raaum, R., Sterner, K.N., Noviello, C.M., Stewart, C.-B. & Disotell, T.R. 2005 Catarrhine primate divergence dates estimated from complete mitochondrial genomes: concordance with fossil and nuclear DNA evidence. Journal of Human Evolution 48, 237–257.CrossRefGoogle ScholarPubMed
Sarich, V.M. & Wilson, A.C. 1967. Immunological time scale for hominid evolution. Science 158, 1200–1203.CrossRefGoogle ScholarPubMed
Scally, A. & Durbin, R. 2012. Revising the human mutation rate: implications for understanding human evolution. Nature Reviews Genetics 13, 745–753.Google ScholarPubMed
Schwartz, J. 1990. Lufengpithecus and its potential relationship to an orang-utan clade. Journal of Human Evolution 519, 591–605.Google Scholar
Sibley, C.G. & Ahlquist, J.E. 1984. The phylogeny of the hominoid primates, as indicated by DNA-DNA hybridization. Journal of Molecular Evolution 20, 2–15.CrossRefGoogle ScholarPubMed
Smith, C.C., Morgan, M.E. & Pilbeam, D. 2010. Isotopic ecology and dietary profiles of Liberian chimpanzees. Journal of Human Evolution 58, 43–55.CrossRefGoogle ScholarPubMed
Stanford, C.B. & Bunn, H.T. (Editors) 2001. Meat-Eating & Human Evolution, 305–331. Oxford, Oxford University Press.Google Scholar
Stevens, N.J., Seiffert, E.R., O'Connor, P.M. et al. 2013. Palaeontological evidence for an Olidgocene divergence between Old World monkeys and apes. Nature 497, 611–614.CrossRefGoogle ScholarPubMed
Takahata, N., Satta, Y. & Klein, J. 1995. Divergence time and population size in the lineage leading to modern humans. Theoretical Population Biology 48, 198–221.CrossRefGoogle ScholarPubMed
Tavaré, S., Marchall, C.R., Will, O., Soligo, C. & Martin, R.D. 2002. Using the fossil record to estimate the age of the last common ancestor of extant primates. Nature 416, 726–729.CrossRefGoogle ScholarPubMed
Werdelin, L. & Sanders, W.J. (Editors) 2010. Cenozoic Mammals of Africa. Berkeley, CA: University of California Press.CrossRefGoogle Scholar
White, F. 1983. The Vegetation of Africa. A Descriptive Memoir to Accompany the UNESCO/AETFAT/UNSO Vegetation Map of Africa. Paris, UNESCO.Google Scholar
Wilson, A.C. 1985. The molecular basis of evolution. Scientific American 253, 164–173.CrossRefGoogle Scholar
Wilson, A.C. & Sarich, V.M. 1969. A molecular time scale for human evolution. Proceedings of the National Academy of Sciences 63, 1088–1093.CrossRefGoogle ScholarPubMed
Wu, R. & Xu, Q. 1986. Relationship between Lufeng Sivapithecus and Ramapithecus and their phylogenetic position. Acta Anthropologia 5, 26–30.Google Scholar
Xiao, M. 1981. Discovery of a fossil hominoid scapula at Lufeng. In Collected Papers of the 30th Anniversary of the Yunnan Provincial Museum, 41–44. Yunnan Provincial Museum.Google Scholar
Yang, Z. & Yoder, A.D. 2003. Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene loci and calibration points, with application to a radiation of cute-looking mouse Lemur species. Systematic Biology 52, 705–716.CrossRefGoogle ScholarPubMed
Yoder, A.D. & Yang, Z. 2000. Estimation of primate speciation dates using local molecular clocks. Molecular Biology and Evolution 17, 1081–1090.CrossRefGoogle ScholarPubMed

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  • Human and ape phylogenies
  • Peter Andrews, Natural History Museum, London
  • Book: An Ape's View of Human Evolution
  • Online publication: 05 January 2016
  • Chapter DOI: https://doi.org/10.1017/CBO9781316180938.004
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  • Human and ape phylogenies
  • Peter Andrews, Natural History Museum, London
  • Book: An Ape's View of Human Evolution
  • Online publication: 05 January 2016
  • Chapter DOI: https://doi.org/10.1017/CBO9781316180938.004
Available formats
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  • Human and ape phylogenies
  • Peter Andrews, Natural History Museum, London
  • Book: An Ape's View of Human Evolution
  • Online publication: 05 January 2016
  • Chapter DOI: https://doi.org/10.1017/CBO9781316180938.004
Available formats
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