Soybean (Glycine max (L.) Merr.) is an important legume crop with high commercial value widely cultivated globally. Thus, the genetic characterization of the existing soybean germplasm will provide useful information for enhanced conservation, improvement and future utilization. This study aimed to assess the extent of genetic diversity of soybean elite breeding lines and varieties developed by the soybean breeding programme of the International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria. The genetic diversity of 65 soybean genotypes was studied using single-nucleotide polymorphism (SNP) markers. The result revealed that 2446 alleles were detected, and the indicators for allelic richness and diversity had good differentiating power in assessing the diversity of the genotypes. The three complementary approaches used in the study grouped the germplasm into three major clusters based on genetic relatedness. The analysis of molecular variance revealed that 71% (P < 0.001) variation was due to among individual genotypes, while 11% (P < 0.001) was ascribed to differences among the three clusters, and the fixation index (FST) was 0.11 for the SNP loci, signifying moderate genetic differentiation among the genotypes. The identified private alleles indicate that the soybean germplasm contains diverse variability that is yet to be exploited. The SNP markers revealed high diversity in the studied germplasm and found to be efficient for assessing genetic diversity in the crop. These results provide valuable information that might be utilized for assessing the genetic variability of soybean and other legume crops germplasm by breeding programmes.

This article focuses on advances in both basic and applied research on soybean germplasm resources collected from China and dispersed to the world. Many landraces developed over the course of the 4500 years since its domestication in the Huangdi period. Systematic germplasm collection was begun in the early 20th century by Professor Shou Wang, and since then over 170,000 accessions have been conserved worldwide. Evaluation with respect to key morphological characteristics, pest resistance, abiotic stress tolerance and nutritional quality attributes has been widely carried out. In addition, genetic diversity has been assessed at the DNA level, and used to establish core collections for both cultivated (Glycine max) and wild (Glycine soja) soybean. Some core sets have targeted the most used parental lines, and others have focused on specific traits, such as resistance to the soybean cyst nematode or to soybean mosaic virus, or enhanced phosphorus use efficiency. The recent acquisition of the soybean genome sequence should accelerate the utilization of not only the Chinese soybean germplasm collection, but also those maintained elsewhere in the world.