Class-1 polypeptide chain release factors (RFs)
trigger hydrolysis of peptidyl-tRNA at the ribosomal peptidyl
transferase center mediated by one of the three termination
codons. In eukaryotes, apart from catalyzing the translation
termination reaction, eRF1 binds to and activates another
factor, eRF3, which is a ribosome-dependent and eRF1-dependent
GTPase. Because peptidyl-tRNA hydrolysis and GTP hydrolysis
could be uncoupled in vitro, we suggest that the two main
functions of eRF1 are associated with different domains
of the eRF1 protein. We show here by deletion analysis
that human eRF1 is composed of two physically separated
and functionally distinct domains. The “core”
domain is fully competent in ribosome binding and termination-codon-dependent
peptidyl-tRNA hydrolysis, and encompasses the N-terminal
and middle parts of the polypeptide chain. The C-terminal
one-third of eRF1 binds to eRF3 in vivo in the absence
of the core domain, but both domains are required to activate
eRF3 GTPase in the ribosome. The calculated isoelectric
points of the core and C domains are 9.74 and 4.23, respectively.
This highly uneven charge distribution between the two
domains implies that electrostatic interdomain interaction
may affect the eRF1 binding to the ribosome and eRF3, its
activity in the termination reaction and activation of
eRF3 GTPase. The positively charged core of eRF1 may interact
with negatively charged rRNA and peptidyl-tRNA phosphate
backbones at the ribosomal eRF1 binding site and exhibit
RNA-binding ability. The structural and functional dissimilarity
of the core and eRF3-binding domains implies that evolutionarily
eRF1 originated as a product of gene fusion.