Electronic navigational charts (ENCs) are specialised geospatial datasets, issued by or on the authority of a government or hydrographic office, in accordance with the International Hydrographic Organisation's (IHO) standards, specifications and symbol sets. The datasets generally comprise encoded information collected from hydrographic surveys, aimed primarily at the safety of navigation. Most ENCs are not openly available, since the encrypted datasets can be acquired through various license schemes via a centralised distribution network coordinated by two organisations operating on behalf of the coastal states that produce them. This paper describes a methodology and an integrated system developed at the National Technical University of Athens Cartography Laboratory for the generation of web-based nautical charts utilising open data and free software. The system compiles nautical charts compliant with IHO's S-101 latest standard; using open hydrospatial data retrieved from marine spatial data infrastructures (MSDI) and other qualified volunteered geographic information (VGI) sources. Open-source geospatial libraries and web-map vector technologies are used to build the system components and software scripts developed to enable automated compilation. The study also discusses how the system can be improved further by leveraging web services for end-to-end process automation and satellite-derived bathymetry for accurate depiction of seabed topography in low-depth areas.