A functional traits approach was adopted to examine patterns of fish diversity in relation to environmental and spatial variables and for comparison with findings from earlier analyses of fish taxonomic diversity in a nearly pristine river in the Llanos region of Colombia. Fishes were surveyed during the low-water period at 34 sites along the longitudinal fluvial gradient of the Bita River, a clearwater tributary of the Orinoco River. We compiled a matrix of 37 traits associated with locomotion, feeding, and defense for 132 species to compute functional β diversity metrics among four reaches along the entire longitudinal fluvial gradient and also within reaches. Functional redundancy (trait under-dispersion) was found to be common throughout the fluvial gradient. Functional β diversity was high at both spatial scales, with widespread evidence of functional nestedness and functional turnover, especially in upper reaches. In the Bita River, environmental filtering and stochastic processes, such as random dispersal, appear to be the dominant mechanisms influencing fish functional diversity. Inferences derived from analysis of functional versus taxonomic diversity are largely congruent, although analysis of functional β diversity found more evidence of nestedness than turnover at both spatial scales. Both lines of evidence stress the importance of habitat heterogeneity and aquatic habitat connectivity for conservation of high species diversity in this system.

Relative to the numerous studies focused on mammalian schistosomes, fewer include avian schistosomatids particularly in the southern hemisphere. This is changing and current research emerging from the Neotropics shows a remarkable diversity of endemic taxa. To contribute to this effort, nine ducks (Spatula cyanoptera, S. versicolor, Netta peposaca), 12 swans (Cygnus melancoryphus) and 1,400 Physa spp. snails from Chile and Argentina were collected for adults and larval schistosomatids, respectively. Isolated schistosomatids were preserved for morphological and molecular analyses (28S and COI genes). Four different schistosomatid taxa were retrieved from birds: Trichobilharzia sp. in N. peposaca and S. cyanoptera that formed a clade; S. cyanoptera and S. versicolor hosted Trichobilharzia querquedulae; Cygnus melancoryphus hosted the nasal schistosomatid, Nasusbilharzia melancorhypha; and one visceral, Schistosomatidae gen. sp., which formed a clade with furcocercariae from Argentina and Chile from previous work. Of the physid snails, only one from Argentina had schistosomatid furcocercariae that based on molecular analyses grouped with T. querquedulae. This study represents the first description of adult schistosomatids from Chile as well as the elucidation of the life cycles of N. melancorhypha and T. querquedulae in Chile and Neotropics, respectively. Without well-preserved adults, the putative new genus Schistosomatidae gen. sp. could not be described, but its life cycle involves Chilina spp. and C. melancoryphus. Scanning electron microscopy of T. querquedulae revealed additional, undescribed morphological traits, highlighting its diagnostic importance. Authors stress the need for additional surveys of avian schistosomatids from the Neotropics to better understand their evolutionary history.

The distribution of avian haemosporidians of the genus Leucocytozoon in the Neotropics remains poorly understood. Recent studies confirmed their presence in the region using molecular techniques alone, but evidence for gametocytes and data on putative competent hosts for Leucocytozoon are still lacking outside highland areas. We combined morphological and molecular data to characterize a new Leucocytozoon species infecting a non-migratory red-legged seriema (Cariama cristata), the first report of a competent host for Leucocytozoon in Brazil. Leucocytozoon cariamae n. sp. is distinguished from the Leucocytozoon fringillinarum group by its microgametocytes that are not strongly appressed to the host cell nucleus. The bird studied was coinfected with Haemoproteus pulcher, and we present a Bayesian phylogenetic analysis based on nearly complete mitochondrial genomes of these 2 parasites. Leucocytozoon cariamae n. sp. morphology is consistent with our phylogenetic analysis indicating that it does not share a recent common ancestor with the L. fringillinarum group. Haemoproteus pulcher and Haemoproteus catharti form a monophyletic group with Haemocystidium parasites of Reptilia, supporting the polyphyly of the genus Haemoproteus. We also discussed the hypothesis that H. pulcher and H. catharti may be avian Haemocystidium, highlighting the need to study non-passerine parasites to untangle the systematics of Haemosporida.

Mesocestoides is a controversial tapeworm with significant lack of data related to systematics and life cycles. This helminth has an indirect life cycle with vertebrates, mostly carnivorous mammals, as definitive hosts. Theoretically, a coprophagous arthropod would be the first intermediate host, and herptiles, mammals, and birds, which prey on these insects, would represent the second intermediate hosts. However, recent evidence suggests that this life cycle would require only two hosts, with no arthropods involved. In the Neotropics, although there are records of mammals and reptiles as hosts for Mescocestoides, no molecular analyses have been performed. This work aimed to record an additional intermediate host and molecularly characterize the isolated larvae. Thus, 18 braided tree iguanas (Liolaemus platei) from Northern Chile were collected and dissected during 2019. One lizard was parasitized by three morphotypes of larvae compatible with tetrathyridia of Mescocestoides. To achieve its specific identity, a molecular approach was performed: 18S rRNA and 12S rRNA loci were amplified through cPCR. The inferred phylogenies confirmed the morphological diagnosis and stated that all morphotypes were conspecifics. The sequences for both loci formed a monophyletic clade with high nodal support, representing a sister taxon to Mescocestoides clade C. This study represents the first molecular characterization of any taxon of Mescocestoides from the Neotropics. Future surveys from potential definitive hosts would help to elucidate its life cycle. Furthermore, an integrative taxonomic approach is required in additional studies from the Neotropical region, which would contribute to a better understanding of the evolutionary relationships of this genus.

Monitoring parrot populations is of high importance because there is a general lack of quantified population trends for one of the most threatened avian orders. We surveyed parrots in Nicaragua in 1995, 1999, 2004, and 2013 at a minimum of 227 points within 56 sites stratified among the Pacific, Central Highlands, and Caribbean biogeographical regions to assess population trends. From point-count data we calculated encounter rate, flock rate, and flock size metrics and we used presence/absence data to generate species-specific occupancy estimates. Encounter rate, flock rate, and flock size data suggested family-level declines from 1995 to 2004 with some recovery between 2004 and 2013. Patterns of parrot occupancy varied among species with four decreasing, five increasing, and two with no detectable change. Six species of conservation concern are identified, including the Critically Endangered Great Green Macaw and Yellow-naped Parrot, additionally Olive-throated Parakeet, Scarlet Macaw, Brown-hooded Parrot, and White-crowned Parrot, only listed as Least Concern. All six are likely suffering from deforestation and potential unchecked trade activity in the Caribbean. Differing population trends of the regionally disjunct Yellow-naped Parrot subspecies suggest a link to variable deforestation and trade pressure experienced between the Pacific and Caribbean. Our results highlight the importance of actively monitoring changing parrot populations, even when considered Least Concern, so that directed conservation actions can be taken if needed.

Peru contains the second largest surface area of the Amazon biome. The Peruvian Amazon is threatened by logging, illegal crops, mining, and agricultural expansion. While a number of national parks exist in the Amazon region, privately managed areas like Conservation Concessions can be an attractive complement to existing parks. We compare medium and large mammal communities in a Conservation Concession in Ucayali with the nearby Parque Nacional Sierra del Divisor National Park and describe species relative abundance and richness of both protected areas. Results suggest that Conservation Concessions can harbour an important diversity of mammal species and could provide connections to larger protected areas. However, they are no substitutes for large protected areas, especially for sensitive and threatened species. Further research is needed to demonstrate their complementarity and improve landscape-level connectivity between conservation models.

Understanding the types of movements exhibited by a threatened species is paramount for creating conservation and management strategies. The Campo Miner (Geositta poeciloptera) is a threatened obligate grassland bird endemic to the South American Cerrado. Literature disagrees about its movement ecology, with authors suggesting strategies as contradictory as residency and nomadism. The species requires short and sparse grass cover to breed and seems to be associated with fires, tracking recently burned grassland patches. We studied the movement ecology of marked Campo Miners for seven years, integrating our results with information from citizen science data, museum specimens, and the literature. After investigating every main movement strategy exhibited by bird populations, we found no evidence of regular migration in the species (e.g. altitudinal, short- or long-distance). The Campo Miner is a resident species with territorial behaviour restricted to the breeding season, which apparently results in seasonal variation in its detectability, biasing our perception about its seasonal abundance and distribution. We propose a theoretical framework for understanding local movements in the species, which predicts that Campo Miners: (1) establish their territories at the beginning of the breeding season in patches of suitable habitat; (2) stop defending their territories after the breeding season; (3) stay during the non-breeding season in their home ranges, also wandering across neighbouring home ranges; (4) abandon their home ranges if the grass cover becomes high and dense or when a better quality habitat patch becomes available, using fires as a cue for locating recently burned patches that will soon

Haemosporidian genera Plasmodium, Haemoproteus and Leucocytozoon, responsible for avian malarial infections, are highly diverse and have a wide range of health effects and predictors, depending on the host and its environmental context. Here, we present, for the first time, detailed information on the identity, prevalence and parasitaemia of haemosporidians and other haemoparasites that infect the ash-breasted Sierra finch, Geospizopsis plebejus, in an Andean dry forest. We study the consequences of infection in the host body and health conditions and explore the environmental and intrinsic factors that influence infection status and parasitaemia. We conducted diagnoses by cytochrome b (cytb) sequencing and morphological identification, and estimated the levels of parasitaemia based on microscopy. We identified 6 cytb lineages infecting G. plebejus. Two of them were new lineages: Haemoproteus sp. GEPLE01 and GEPLE02. We also detected Haemoproteus sp. ZOCAP08, Haemoproteus sp. AMAVIR01, Plasmodium homopolare BAEBIC02 and Plasmodium cathemerium ZONCAP15. By microscopy, we detected Haemoproteus coatneyi, Haemoproteus erythrogravidus, P. homopolare and other unidentified species of Haemoproteus, Plasmodium, Babesia sp. and 1 microfilaria. We found no evidence of Leucocytozoon. Additionally, we detected several coinfections by sequencing and microscopy. The prevalence of haemosporidian infections was high (87.7%), and the mean parasitaemia was 61.65 infected cells per 10 000 erythrocytes examined. Prevalence and parasitaemia were higher for Haemoproteus than for Plasmodium. Haemoproteus sp. AMAVIR01 showed the highest prevalence (43.1%) and mean parasitaemia (94.39/10 000 erythrocytes) and might be associated with H. coatneyi. Immature individuals showed a lower prevalence than adults, supporting previous findings.

Metacercariae of the genus Posthodiplostomum are often recorded in freshwater fish hosts. While the diversity and taxonomy of this genus are receiving increasing attention in molecular phylogenetic studies, available data remain geographically biased. Most molecular studies of Posthodiplostomum and morphologically similar (neascus) worms originate in North America and Europe and Asia (more than 60% of DNA sequences are from USA and Canada), with few data currently available from the Neotropics, where high host diversity suggests high and under-sampled parasite diversity. In this study, we report molecular and morphological data from metacercariae of Posthodiplostomum in fish in Puerto Rico, where only a single species has been previously reported. Partial sequences of cytochrome c oxidase subunit 1 from metacercariae from Dajaus monticola (native to Puerto Rico) and the introduced fishes Poecilia reticulata, Parachromis managuensis, Lepomis macrochirus and Micropterus salmoides revealed 7 genetically distinct species-level lineages, of which 4 were novel. We report novel molecular life-cycle linkages in Posthodiplostomum macrocotyle (metacercariae in muscle of the cichlid Pa. managuensis), a species previously known only from adults in birds from South America; and in Posthodiplostomum sp. 23 (metacercariae in poeciliids), which has recently been found in Ardea herodias in Georgia, USA. We also report the first molecular data from Posthodiplostomum sp. 8 in M. salmoides in the Caribbean. Metacercariae of most species were morphologically distinguished and all displayed narrow specificity for fish hosts, with no indication of parasite sharing among introduced and native fishes.

Nest predators use visual, acoustic and chemical cues to locate nests. In the Neotropics, predation is high being the main cause of nest failure. Despite that, it is still not completely clear what kind of information predators are using to find nests or whether predators respond differently according to habitat characteristics. Here, we executed an experimental manipulation to investigate how different ecological factors influence nest predation probability. We hypothesised that egg conspicuousness, nest clustering and a more open vegetation structure would increase nest predation probability, and that nest predation would be higher during the breeding season of most avian species in the region. We used artificial nests baited with plasticine and quail eggs (Coturnix coturnix), manipulated egg coloration and nest density. Artificial nests were distributed over forest and savanna-like vegetations. Overall predation rate was 40.9%. We found that nests baited with conspicuous eggs, located in open habitats, at higher densities and during the dry period were more predated. Results suggest that main predators must be visually orientated, and that egg crypsis is an important trait for open-nest species in the area. Moreover, a higher nest density may affect predator behaviour, favouring an increase in nest searching, which may be facilitated in open habitats.

Many biomes still lack an overall view of their macro-functional structure (i.e., natural biogeographical regions and zones), including the Atlantic Forest biodiversity hotspot. The effective design of protected areas depends on the spatial identification of units with ecologically distinct content, whether it be floristic, phylogenetic or functional. This study used a regionalization approach to identify the potential functional regions of the Atlantic Forest by interpolating functional data from forest remnants into the entire original occurrence area of the biome, including deforested lands. Conservation status was then estimated. Analysis of seven traits of leaf, wood, seed and plant size revealed that the biome is structured over 14 functional regions and three zones (clusters of regions). Functional regions represented specific combinations of traits rather than being characterized by extremely high or low values of a single trait. They retained an average of 29.5% of forest remnants (range: 7.63–54.66%) and 10.82% of protected areas (range: 0.35–35.78%). By analysing the functional space occupied by all regions, captured by two principal component analysis axes using the pixel-level information contained in interpolated trait maps, we showed that large parts of this space were not covered by forest remnants or protected areas and that the most represented regions had serious deficits in protected areas. Although the Serra do Mar mountain range in the south and south-east Atlantic Forest is relevant as a centre of species endemism and richness and has received considerable attention for carrying out ecological studies and creating protection areas, this range does not fully encompass the functional biodiversity of such a rich biome. Our results demonstrate the potential for combining regionalization and conservation approaches to unravel the macro-structures of biomes.

The complete life history of the kleptoparasitic ‘sundew flower fly’, Toxomerus basalis, is presented and illustrated. Adults of this species are photographed alive for the first time, including video recordings of larval and adult behaviour. Adult flies of both sexes visit Drosera (sundews) and show territorial behaviour around the plants, avoiding the dangerous sticky traps and demonstrating recognition of their larval host plant. Females lay eggs directly on non-sticky parts of the Drosera host plants, such as on the lower surface of the leaves and flower stalks, but apparently also on other plants growing in close proximity with the sundews.

The semiarid Caatinga is the largest Seasonally Dry Tropical Forest and Woodland (SDTFW) in the Neotropics. Yet the vast majority of the Caatinga is unprotected, with severe chronic anthropogenic use, exotic species and global warming among its most immediate threats. Here, we contrast the current Caatinga protected areas (PAs) scenery with that of other SDTFWs in the Neotropics. We also analyse the growth process of the PAs in the Caatinga over time across Brazilian PA categories and jurisdictions. The percentage of Caatinga that is protected is average among the SDTFWs. Caatinga has more state than federal PAs; however, the size of the PAs is greater under a federal jurisdiction. Nonetheless, in both jurisdictions, Environmental Protected Areas, one of the least restrictive categories, are more representative in terms of total area, corresponding to nearly 80% of the Caatinga PA system. Our results are relevant for international conservation goals because they depict the current PA scenery and clarify the challenges for achieving the actual preservation of the unique Caatinga biome.

The genus Oswaldocruzia Travassos, 1917 includes approximately 90 species that are parasitic on amphibians and reptiles around the world, of which 43 occur in the neotropical region. However, molecular data supporting the taxonomic status of most species of the genus are scarce, and their phylogenetic relationships remain unknown. Using specimens of four molineid taxa (Oswaldocruzia belenensis Santos, Giese, Maldonado Jr. and Lanfredi, 2008; Oswaldocruzia chabaudi Ben Slimane & Durette-Desset, 1996, Oswaldocruzia chambrieri Ben Slimane & Durette-Desset, 1996 and Kentropyxia hylae Feitosa, Furtado, Santos and Melo, 2015) from amphibian hosts collected in different regions of Pará, Brazil, we conducted morphological studies, molecular analyses and phylogenies (maximum likelihood and Bayesian inference) using the cytochrome c oxidase subunity I (Cox1) gene. The newly generated sequences were compared with those of ten publicly available Cox1 sequences of Oswaldocruzia from Mexico. Our findings demonstrated significant differences between the sequences of amazonian specimens and sequences from specimens collected in Mexico, and we suggest that host–parasite cospeciation or habitat use might be related to molineid evolution in amphibian hosts. Additionally, this work presents new hosts and new geographical records for species of Oswaldocruzia from the neotropics.

Herbivores use a wide range of factors to choose their host, including their own physiological states, physical characteristics of plants and the degree of competition. Field observations of herbivores in their native habitats provide a means for simultaneously estimating the relative importance of these factors, but statistical analysis of all these factors may be challenging. Here we used a 7-week dataset of leaf-cutting ant (Atta cephalotes) foraging in a diverse Neotropical arboretum containing 193 tree species (822 trees) to examine the relative role of tree phylogeny, territoriality and tree functional characteristics using a phylogenetic generalized least squares (PGLS) model. We observed that 54 tree species (117 trees) were foraged by the ants. This pattern was not random, but reflected known features of leaf-cutting ant foraging behaviour, such as a preference for larger trees and the decreased likelihood of foraging at the periphery of a colony’s territory. However, random effects such as tree phylogeny, the identity of individual trees and colony-specific effects explained most of the variation in foraging data. A significant phylogenetic effect on foraging likelihood (λ = 0.28), together with repeated measures of foraging on the same tree species, allowed estimation of relative palatability for each plant species. PGLS models can be flexibly scaled to include other covariates for even more complex investigation of foraging behaviour, and the link function can be modified to include the amount of plants foraged. As a result, PGLS can be used as a flexible framework for the study of LCA foraging.

The great fruit-eating bat (Artibeus lituratus) is a large-sized species that forages primarily on fruits. This species is widespread throughout the Neotropics, where it is common in natural areas and also occupies forest patches and cities. In this study, we review the composition of Artibeus lituratus diet in Brazil as well as the size of fruits and seeds, plant geographic origin, and sampling methods used in natural versus urban habitats. We show that Artibeus lituratus is able to consume a higher proportion of exotic fruits with large seeds in urban environments than in natural areas. Fruit diameter was not statistically different between environments, but both fruit and seed diameters are smaller when detected by fecal sampling than by other methods. This difference is likely due to the fact that in natural habitats studies are predominantly based on fecal samples, which hinders the detection of large unswallowed seeds. Consequently, we recommend the use of complementary sampling methods (not only the widely used technique of fecal sorting) in order to produce more accurate descriptions of frugivorous bats’ diets. We suggest that the ability to exploit fruits of exotic plant species including the ones with large seeds may be a key trait for the persistence of A. lituratus in urban habitats.

We describe Hedruris dratini n. sp. (Nematoda, Hedruridae) from Hydromedusa tectifera and Phrynops hilarii in Argentina based on morphological and molecular characters. Also, we provide information about its life cycle. The new species differs from other species of the genus by possessing the excretory pore, nerve ring and deirids at equal distance from the anterior end. Additionally, H. dratini n. sp. has mammilated eggs and males possess nine pairs of caudal papillae. The subadults and adults of H. dratini n. sp and H. orestiae were characterized by sequencing the small subunit ribosomal DNA (18S). We present for the first time a life cycle of a species of Hedruris that includes an amphipod as intermediate host and a reptile as definitive host. Furthermore, we analysed the host and geographic distribution of all Hedruris species. Although the genus has a cosmopolitan distribution and parasitizes a great host diversity, the majority of species have a Gondwanian distribution, with amphibians being the preferred hosts.

Leaf-cutting ants are dominant herbivores in Neotropical rain forests, and their colony densities increase in disturbed habitats such as forest edges. However, while it is well-established that leaf-cutting ants profit from changes to the food-plant community, the phylogenetic dimension of this ant–plant interaction remains poorly understood in fragmented forests. We studied diet composition of Atta cephalotes in the edge and interior of Atlantic forest in north-east Brazil (8°30′S, 35°50′W). We applied phylogenetic signal analysis to investigate the diet across plant lineages and performed phylogenetic generalized linear models to analyse the diet in both habitats. We found a phylogenetic signal in diet and in leaf mechanical resistance, which means that A. cephalotes selects closely related food plants with less resistant leaves. Most preferred species belong to Malpighiales, Rubiaceae and Melastomataceae. We also found that irrespective of phylogeny, ants select food plants with less resistant leaves, both in edge and interior. However, ants choose more abundant plants only in edges. High abundance of optimal diet facilitates foraging in forest edges and explains why colony densities increase in disturbed habitats. Finally, by favouring or disfavouring specific clades, leaf-cutting ants contribute to changes in the phylogenetic structure of tropical rain forests, e.g. phylogenetic impoverishment.

Habitat fragmentation is a major cause of biodiversity loss in agricultural landscapes. Studying habitat connectivity in fragmented landscapes is therefore pivotal for better understanding the factors that shape faunal communities in anthropogenic landscapes. Amphibians have limited dispersal abilities, strong site fidelity and often perform seasonal movements to reach relatively distant breeding habitats. This calls for a better knowledge of which landscape features might promote dispersal, especially in crops. We applied graph-theoretic network analyses to a set of 35 waterbodies embedded in 10 rice fields in a savanna–rain forest ecotone, Tocantins, Brazil, to assess the importance of landscape features (forest patches, waterbodies) for anuran functional connectivity within the entire network. We used taxonomic, functional and phylogenetic diversity as proxies of anuran functional connectivity (i.e. dispersal ability intrinsic to the taxa), based on previous associations uncovered between species diversity metrics and landscape connectivity. We found that, assuming individuals belonging to each of the 14 amphibian species recorded are unable to disperse over 800 m, forest and waterbody area and abundance are the most important predictors of waterbody importance for connectivity. Hence, pond network connectivity for amphibians in rice crops depends on (1) abundant and large forest patches in the area surrounding waterbodies, and (2) a network of abundant waterbodies.