A simple approach to estimate the number of α-helical
and β-strand segments from protein circular dichroism
spectra is described. The α-helix and β-sheet conformations
in globular protein structures, assigned by DSSP and STRIDE
algorithms, were divided into regular and distorted fractions
by considering a certain number of terminal residues in
a given α-helix or β-strand segment to be distorted.
The resulting secondary structure fractions for 29 reference
proteins were used in the analyses of circular dichroism
spectra by the SELCON method. From the performance indices
of the analyses, we determined that, on an average, four
residues per α-helix and two residues per β-strand
may be considered distorted in proteins. The number of
α-helical and β-strand segments and their average
length in a given protein were estimated from the fraction
of distorted α-helix and β-strand conformations
determined from the analysis of circular dichroism spectra.
The statistical test for the reference protein set shows
the high reliability of such a classification of protein
secondary structure. The method was used to analyze the
circular dichroism spectra of four additional proteins
and the predicted structural characteristics agree with
the crystal structure data.