National Red Lists are useful tools in establishing local conservation priorities. The threat status of Estonian lichens based on the IUCN system has been assessed twice, in 2008 and 2023. In the latest Red List, the proportion of species of elevated conservation concern, that is taxa belonging to the Near Threatened and threatened categories or having become regionally extinct in Estonia, was high (58%) while Least Concern (LC) species represented one-third (36%) of all taxa. Macrolichens were more threatened than microlichens. The Red List Index (RLI), illustrating the trends of species in their projected extinction risk, was calculated. The values were low (< 0.7 in 2023), thus indicating a heightened risk both for the set of all species and for macrolichens. More than half of all Estonian lichens are associated with woodlands and 54% of these species are of elevated conservation concern. Lichens preferring broad-leaved deciduous trees included more threatened than LC species, while among lichens preferring other deciduous or coniferous trees the proportion of LC species was higher than that of threatened taxa. Lichens inhabiting calcareous grasslands had the highest share (69%) of taxa of elevated conservation concern. Comparisons of national red-listed data with four selected countries (Czech Republic, Denmark, Finland and Sweden) revealed that the biggest overlaps of Estonian taxa of elevated conservation concern were with the Czech Republic and Finland.