Copper-sulfides within carbonatites and phoscorites of the Phalaborwa Igneous Complex, South Africa, have been investigated since the middle of the 20th Century. However, aspects of ore formation have remained unclear. This study examines the mechanisms involved in Cu-sulfide mineralisation by micro-focus X-ray computed tomography as applied to sulfide-rich drill core samples. Several texturally distinct assemblages of magmatic sulfides can be identified, including: (1) <500 μm rounded bornite and chalcopyrite grains disseminated within the gangue; (2) elongated mm-scale assemblages of chalcopyrite and bornite; and (3) mm-to-cm thick chalcopyrite cumulates. Chalcopyrite veins were also observed, as well as late-stage valleriite, documenting late-stage fluid circulation within the pipe, and alteration of magmatic and hydrothermal sulfides along fractures within the gangue, respectively. The results of micro-focus X-ray computed tomography indicate that magmatic sulfides are sub-vertically aligned. Spatial variability of the sulfide assemblages suggests that textural changes within sulfide layers reflect fluctuating magma flow rate during emplacement of carbonatite–phoscorite magmas, through coalescence or breakup of sulfide liquid droplets during ascent. Modal sulfide abundances, especially for disseminated assemblages, differ from one carbonatite–phoscorite layer to another, suggesting a strong control of the mechanical sorting in the formation of Cu-sulfide textures within the Loolekop carbonatite. The alternation of carbonatite and phoscorite within the intrusion suggest that the Loolekop Pipe was emplaced through a series of successive magma pulses, which differentiated into carbonatite and phoscorite by melt immiscibility/progressive fractional crystallisation and pressure drop. Three-dimensional textural analysis represents an effective tool for the characterisation of magma flow and is useful for the understanding of magmatic processes controlling sulfide liquid-bearing phoscorite–carbonatite magmas.