Expression of the putative replicase of potato
leafroll virus (PLRV) is regulated by −1 ribosomal
frameshifting in which a primary viral transcript has two
overlapping open reading frames (ORFs). A region of 39
nt at the junction of the two ORFs is essential for frameshifting
to occur. It has been shown to harbor two signals, one
active on the level of the primary structure, termed the
slippery sequence, and one component that forms a secondary
or tertiary level structure, described as either a pseudoknot
or a stem-loop motif. We have performed extensive site-directed
mutagenesis of the frameshifting region and analyzed individual
mutants for their ability to promote −1 frameshifting
in vitro. Detailed comparison of our results with analogous
mutants in the frameshifting region of the evolutionarily
related beet western yellow virus, for which a crystal
structure is available, unequivocally argues for the pseudoknot
to be the structural motif necessary for the frameshifting
function in PLRV transcripts. Mutations in PLRV that affect
putative pseudoknot-specific tertiary-base interactions
drastically affect frameshifting activity. In addition,
a specific deletion mutant was identified that displayed
PLRV wild-type frameshifting activity with only 22 nt available
for pseudoknot formation.