Migratory birds are experiencing widespread population declines, underscoring the urgency of effective conservation actions. Long-term monitoring of migratory birds, especially during migration, is crucial for such actions yet remains technically challenging. Bioacoustic monitoring of nocturnal flight calls (NFCs) constitutes a promising technique to monitor migratory birds during migration. Such monitoring has increased in North America and Europe, but its application on the East Asian–Australasian Flyway (EAAF) remains limited. Here, we present findings from an NFC monitoring project conducted at a recording station in central Beijing, China over four migration seasons. From around 3,350 hours of recording effort, we manually extracted and identified 84,135 NFCs, involving at least 111 species or species groups that are associated with a wide range of habitat types. We also found that NFCs provided additional information on species’ migration phenology in comparison with citizen science observation data. To our knowledge, this study is the first formal investigation of bird migration using NFC monitoring on the EAAF, serving as a proof-of-concept case for wider, long-term monitoring efforts in this traditionally understudied region. Our findings also highlight the significance of incorporating migratory bird conservation into urban planning and land management practices.