The effects of a number of cryoprotectants on the
kinetic and structural properties of glycogen phosphorylase
b have been investigated. Kinetic studies showed
that glycerol, one of the most commonly used cryoprotectants
in X-ray crystallographic studies, is a competitive inhibitor
with respect to substrate glucose-1-P with an
apparent Ki value of 3.8% (v/v). Cryogenic
experiments, with the enzyme, have shown that glycerol
binds at the catalytic site and competes with glucose analogues
that bind at the catalytic site, thus preventing the formation
of complexes. This necessitated a change in the conditions
for cryoprotection in crystallographic binding experiments
with glycogen phosphorylase. It was found that 2-methyl-2,4-pentanediol
(MPD), polyethylene glycols (PEGs) of various molecular
weights, and dimethyl sulfoxide (DMSO) activated glycogen
phosphorylase b to different extents, by stabilizing
its most active conformation, while sucrose acted as a
noncompetitive inhibitor and elethylene glycol as an uncompetitve
inhibitor with respect to glucose-1-P. A parallel
experimental investigation by X-ray crystallography showed
that, at 100 K, both MPD and DMSO do not bind at the catalytic
site, do not induce any significant conformational change
on the enzyme molecule, and hence, are more suitable cryoprotectants
than glycerol for binding studies with glycogen phosphorylase.