During the Epiclassic period (AD 600–900), the northern frontier of Mesoamerica consisted of a regional network of polities focused on large, hilltop centers, including the site of La Quemada in the Malpaso Valley of Zacatecas, Mexico. Although extensive archaeological research has been conducted at the site, the refinement of its chronology is essential for two reasons: (1) to establish the chronological control necessary to characterize social processes diachronically and (2) to ensure that the occupational history of La Quemada is accurately integrated into the regional chronology of the northern frontier. A combination of frequency seriation, correspondence analysis, and discriminant function analysis results in the recognition of three occupational phases across the areas excavated by the La Quemada-Malpaso Valley Archaeological Project (LQ-MVAP). Our three-phase chronology independently confirms both the intra-context ordering of analytic units and the previously proposed growth trajectory of the site: beginning in the monumental core, expanding into the western flank, and later retracting back into the core. The separation of the LQ-MVAP material record into chronological phases means it is now possible to track changes in the social processes that may have contributed to the formation, maintenance, and decline of La Quemada and other northern frontier polities.